Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1771 ATGACCACCACCACAACCACTTCTTCTCAGATCCTTCGACACACCACCGTCTTCCTCTCCGACGTCCTTTCGCATTCCGAACTCCGACGCCGCCTCATTTCTACACTCCTTCGCGACTCTTCAATCTCCAGCCACATCACCCTCAAACACCTCAATCTAGCTTCCGACACTCTCAATAATGCTATCTCCGTCTCCAGCCCTTCCATCCGATCCTCTTCCCTCACCCTCGCCGAGAAGCTCCTCCTCCCTCTCCCTCAGAATTCCATTTCATCTTTCCTTCTCTCTATCATATACACGATCAACAAACGACAAGTCGAAGCCGCCTTAAGTCTCCTTCAAGTTTTCTATTTAAGCCCTTCGTTGGCCCGATCGGAAATCGCTCCGATTCTCTACGAGCAGCTGTTTACTCTCCACCTCCTCCCAGTTTTCCGATCCTTCGATGAACAGAGAGCAAAAATACTGCGATCTACATCGGCAAACTCGTCACGCTATCCAGATGATTATTCAATTTTGGACGAATCTGTTGTCTTACCCTCCACGAACTTGTTGTCGCGGATGAGCGACGATCAAACCTCGAAGCTGAGGGAATTGGAGAGAGACTACGAAGAGGCTATTGATGACAATTGCAGGATTGTTGCCGAGTACTTCAAAGAAGTTTTGGCGAATAATACCGGTGACTCATCAATAAGTCCGCCATTGTCGGTTCTGAAGAACAGTAGAGATGATTCAGAAATGGAGCATAGTCAAGAGGAGATAGAGGAAACAAATATGCCTTTGTTTAAGATCGGGCGGTATAATCCAATTTGGACCGAAAGGGAAGCGTCTAATGAATTTTCGAGTAACAGTTTCAGCGCCAAGTGTTTGAATGCACCGTTTTACCCTCAAAGAGTCTCTCCCAAAATCCTTAAAGACCAAGAATCTTCTAAAAAACTGTCCTTACCATGCCGTTCATACAGAGATGCTGAATCTGATCATGAGTCTTCAGAGGATGAAAATATGACTTGTTATTCGTCAGAATCAGAGGCAGAAACTAAGGAAAAAGACACGATGGTACCACTGGAGCCTCGACGAAGCCAAATCCAAGAATCAGTGCAAATTAATATTGCAGAACCCGGAGGTTCCCCAGATTATACCATGGCAGATTATGATCACCAGCCGCCTGGAAATGGAAAATGTACGCCTCCCAAGGACTTTGTCTGTCCAATAACTAGCAATCTATTTGATGATCCAGTGACTCTTGAGACAGGACAGACATATGAAAGGAAAGCTATCGAAGAATGGTTCAACCGGGGAAACTCAACCTGTCCAATCACCCGCCAGAAGTTGCAAAATACCCAGCTGCCTAAAACAAATTATGTGCTCAAACGACTAATTGCAAGCTGGAAAGAACAGAATCCCAATTCAATCCCGTCTCCATCTCCATCTGAGAGTTTACATACTGAAACCGAGGTACCAATCAAGTCCACAACGCCTTCAACTTCTCCTAATAGTGTTATAACTCAAGCCAATGTTGATGGGATGATTGGTGAGTTACGACATGCAATTAACAACCTGTATATGTCAGAGATACTCGAGGAGTCTGAAATGGCCGTGCTTCAAATTGAGCAATTTTGGAAAGAAGTAAACCTGGGAGTGGATACCCAGAGCATGTTATCAAAACCTCCAATCATTAATGGGTTCATGGAGATTCTATTTAATTCTGTTGATCCCCAGGTGCTTCAAGCAACAGTTTTTCTTCTGGCTGAGTTGGGTTCTACGGACAACGCTGTTATTCAGACTCTTACCCGAGTGGACTCGGATGTGGAATGTATTATGGCGCTTTTCAATAATGGCTTGACCGAGGCTGTTGTATTGATATATCTCCTGAAGCCTTCTACTACAGTTCTTGCAGAAATGGCCATATGGGAGTCTCTAGTAACGGTTTTCGATAAGAAAGAGGAGGACTTGCTTAAGATGTGCATAAAGCCCAAGTCAGCTGCGGTACTTTTACTGGCACAGATTCTTGGAAGCAATGAGGAGAGAATTACATCTTCAGTAGCCAAGACTTTGATAAATGGTAGCGTAATTGAATGTATATTTGGCAGTTTTCGAGCTGAGTGGGCAGAGGAGAGAATTGCTGCAGTTGAGATCTTATTAAGATGCATCCAGGAGGATGGAACTTGCAGGCATCTCATTGCTGAAAAAGTTGAGCTGTCTCCGGTTTTGGAAAGCTTCATTTGGGCGAATGATGTAGAACGTTTTAAGACATTCCAATTTTTTTCCGAGTTAGTCAAATTAAATAGGAGGACATTGAATGAACAAATCCTCCACATTATAAAGGAAGAAGGTGCTTTCAGTACAATGCACACTTTCCTCGTTTATATGCAGACAGCCCTTCAAGATCAATGTCCAGTTGTGGCTGGCCTCTTACTCCAACTTGATCTTCTGGTAGAACCAAGAAAGATGAGTATATACCGTGAAGAGGCTATAGATACTCTTATTTCATGCCTCAGAAACAATGATTTCCCGGCTACCCAAGTAGTAGCTGCTGACACAATAGTGTCATTACAAGGGAGATTCAACTTCGCCGGAAAGCCTCTTATCAGAGAAGTCCTTCTCAAACGTGCTGGCTTTAACAGAAATCATAGAAGTCTTGATCAGATGGACCATATCAGCAATAGCAGTGGAGAACTTGAAACGAATCCAGAAGAAGAGAAGGCTGCTGATGATTGGGAGAGAAAAATTGCGTCTGCTTTAGTTGGCCATGAGTTTGGTCTACTTTTTGAGGCTTTAGCTGAAGGCCTGAAAAGCCGAAGCACACAACTAAGTTCTGCATGCTTTATATCAGCCACATGGCTTACATACATGCTTACCATTCTACCAGATACAGGAATAAGAGGAGCAGCCTGTGTCTGCGTGCTCAAGCGCTTTGTATCTATATTAAAATCTGCTAAGGACACTGAAGAGAGAATCCTTTCTGTGCTTGCTTTAAATAGCTTTCTTCAGTACCCTGATGGATTGCTTGATCTTACTTCCTACACTAAGGATGTCCTAAAAGGTCTGAGAGAGCTAAAGAGATTCTCCCCTATGGCATCTGAAATGCTTAAAGTTCTGGTTGAAGAGAATGAATCTAAAGCTGGAATCTGGACGCACAAAGAGTTAATTCCGGTAGATTGCAGTGAGAATGGAGAAGTGTTGTCTGTCATATGTCATAAGGATAAAATCTTTTCAGGCCATTCAGATGGAACTATCAAGGTCTGGGCAGTAAGGGGGAGCTTATTCCATCTTATACAAGAGACACAAGAACACATGAAGGCGGTTTCAAGTTTGGCAATTTCAGAATCTGGTGACAGATTATACAGTGGTTCACTTGATCGATCTGTAAAGGTCTGGTCTATAGGAAAGTCAGCAATACAGTGTGTGCAGGTGCATGATATGAAAGATCAAATTCATAATTTAGCTGTAGCCAATAGCAGATTCTGCTACATTCCTCATGGAAATGGTGTCAAGGTTCAATCATTGAATGGAGAATCGAGGCTGTTAAACAGTAACAAATACGTCAGGTGTTTATCTCTTGTTCATGAGAGACTATACTGCGGATGCCACGACAACAGTATTCAGGAGATAGATTTGGAAACAGGAACATTGAATACCATTCAAAGTGGTTCTAAAAGATTGCTTGGTAAAGCAAATCCCGTTTATGCCATACAAGTGCGTGGTGAACATATATATGCAGCTAATTCTTCCTTGGATGGAGCTGTTATAAAGATATGGAATACTTCCAATTACAGTATGATTGGATCACTGGGAATTGCATCAGAAGTGAGGACGATGGCAACGAGCTCAGAATTAATTTACTTGGGATGCAGGGGAGGAGCTGTGGAAATTTGGGACAGGAAGAAACAGAACAGAATTGATACATTACAGATTGGTACAAATGGTAAGATTGATTGCATGGCTGTCAATGGAAATGAAGAAATTTTTGTCATTGGAACCTCTGATGGCCGAATTCAGGCATGGGGAATAAACTAA 4011 0.4281 MTTTTTTSSQILRHTTVFLSDVLSHSELRRRLISTLLRDSSISSHITLKHLNLASDTLNNAISVSSPSIRSSSLTLAEKLLLPLPQNSISSFLLSIIYTINKRQVEAALSLLQVFYLSPSLARSEIAPILYEQLFTLHLLPVFRSFDEQRAKILRSTSANSSRYPDDYSILDESVVLPSTNLLSRMSDDQTSKLRELERDYEEAIDDNCRIVAEYFKEVLANNTGDSSISPPLSVLKNSRDDSEMEHSQEEIEETNMPLFKIGRYNPIWTEREASNEFSSNSFSAKCLNAPFYPQRVSPKILKDQESSKKLSLPCRSYRDAESDHESSEDENMTCYSSESEAETKEKDTMVPLEPRRSQIQESVQINIAEPGGSPDYTMADYDHQPPGNGKCTPPKDFVCPITSNLFDDPVTLETGQTYERKAIEEWFNRGNSTCPITRQKLQNTQLPKTNYVLKRLIASWKEQNPNSIPSPSPSESLHTETEVPIKSTTPSTSPNSVITQANVDGMIGELRHAINNLYMSEILEESEMAVLQIEQFWKEVNLGVDTQSMLSKPPIINGFMEILFNSVDPQVLQATVFLLAELGSTDNAVIQTLTRVDSDVECIMALFNNGLTEAVVLIYLLKPSTTVLAEMAIWESLVTVFDKKEEDLLKMCIKPKSAAVLLLAQILGSNEERITSSVAKTLINGSVIECIFGSFRAEWAEERIAAVEILLRCIQEDGTCRHLIAEKVELSPVLESFIWANDVERFKTFQFFSELVKLNRRTLNEQILHIIKEEGAFSTMHTFLVYMQTALQDQCPVVAGLLLQLDLLVEPRKMSIYREEAIDTLISCLRNNDFPATQVVAADTIVSLQGRFNFAGKPLIREVLLKRAGFNRNHRSLDQMDHISNSSGELETNPEEEKAADDWERKIASALVGHEFGLLFEALAEGLKSRSTQLSSACFISATWLTYMLTILPDTGIRGAACVCVLKRFVSILKSAKDTEERILSVLALNSFLQYPDGLLDLTSYTKDVLKGLRELKRFSPMASEMLKVLVEENESKAGIWTHKELIPVDCSENGEVLSVICHKDKIFSGHSDGTIKVWAVRGSLFHLIQETQEHMKAVSSLAISESGDRLYSGSLDRSVKVWSIGKSAIQCVQVHDMKDQIHNLAVANSRFCYIPHGNGVKVQSLNGESRLLNSNKYVRCLSLVHERLYCGCHDNSIQEIDLETGTLNTIQSGSKRLLGKANPVYAIQVRGEHIYAANSSLDGAVIKIWNTSNYSMIGSLGIASEVRTMATSSELIYLGCRGGAVEIWDRKKQNRIDTLQIGTNGKIDCMAVNGNEEIFVIGTSDGRIQAWGIN 1336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1771 1336 Coils Coil 187 207 - -
Lele07g1771 1336 SUPERFAMILY WD40 repeat-like 1064 1335 IPR036322 GO:0005515
Lele07g1771 1336 Pfam U-box domain 395 465 IPR003613 GO:0004842|GO:0016567
Lele07g1771 1336 MobiDBLite consensus disorder prediction 312 332 - -
Lele07g1771 1336 SUPERFAMILY RING/U-box 391 471 - -
Lele07g1771 1336 MobiDBLite consensus disorder prediction 464 498 - -
Lele07g1771 1336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 381 471 IPR013083 -
Lele07g1771 1336 SMART WD40_4 1294 1334 IPR001680 GO:0005515
Lele07g1771 1336 SMART WD40_4 1043 1081 IPR001680 GO:0005515
Lele07g1771 1336 SMART WD40_4 1255 1291 IPR001680 GO:0005515
Lele07g1771 1336 SMART WD40_4 1086 1125 IPR001680 GO:0005515
Lele07g1771 1336 SMART WD40_4 1216 1252 IPR001680 GO:0005515
Lele07g1771 1336 SMART WD40_4 1160 1203 IPR001680 GO:0005515
Lele07g1771 1336 Pfam WD domain, G-beta repeat 1092 1125 IPR001680 GO:0005515
Lele07g1771 1336 MobiDBLite consensus disorder prediction 312 351 - -
Lele07g1771 1336 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 3 1335 - -
Lele07g1771 1336 CDD RING-Ubox_PUB 398 440 IPR045210 -
Lele07g1771 1336 Gene3D - 1031 1336 IPR015943 GO:0005515
Lele07g1771 1336 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1093 1126 - -
Lele07g1771 1336 ProSiteProfiles U-box domain profile. 393 468 IPR003613 GO:0004842|GO:0016567
Lele07g1771 1336 SUPERFAMILY ARM repeat 514 1014 IPR016024 -
Lele07g1771 1336 SMART Ubox_2 397 461 IPR003613 GO:0004842|GO:0016567
Lele07g1771 1336 ProSiteProfiles Trp-Asp (WD) repeats profile. 1093 1126 IPR001680 GO:0005515
Lele07g1771 1336 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1302 1336 - -
Lele07g1771 1336 ProSiteProfiles Trp-Asp (WD) repeats profile. 1302 1336 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1771 Lele-ChrLele07 11107645 11114218 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1771 393 474 U-box Gene Family AT1G67530 51.220 3.02e-18 89.0