Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1761 ATGGGTCTTCTTAGTCTCTCTCTTCTCTTTCTACTTTTCTTCCATGTTACAGCACAACAACAGATGAACGATAGTGCACCTTCACTCGATGGAATCGCCAATTTCCAACCAAGTTTAGCAGTTGTCATAGGAATCTTATGTCTTATGTTTTCACTTACATTCATTCTTCTCATGTATGCCAAGTTCTGTCAACGCAGAGCTTCAGCTCACGTTGACCCTGAGAACCTCCCTGAACTTGTGAGATCAAGGTCCAGAAGATTCTCAGGAATCGACAAGACTGTCATAGAATCTCTCCCCTTCTTCAGATTCTCTGCCCTCAAAGGCTCAAAAGAAGGTCTTGAATGTGCTGTTTGTTTGTCAAAGTTTGAAGACATTGAAATCCTTAGACTTCTTCCCAAATGCAAACACGCCTTCCACATCGATTGCATCGATCATTGGCTCGAGAGACACTCTAGTTGTCCTCTTTGTAGACGAAAGGTTAATTCTGATGACCCAACCATGCTTACATATTCAAACAGTTTGAGGCTTCTAATAACAAACCAGTCAGAGAATAATGGTGAAGAACCCAATATAGAGATCTTTGTTCAAAGGGAAGAAGAACGCCATGGTTCTTCTAGATTCAGAATTGGAAGCAGCTTAAGGAAATCTGGAAAGGGTATTATAAAAGAAGAAGAATTGCCAATCCAAGAAGAAGAAACAGAGCATGATGGTGGTGGAAAGCTGTATCACAGACATAACCACAAGATTACTATAAGTGATGTTGTTTTCAAGCACCGATGGAGCAACGTGAGCTCTTCGGACCTGATGTGTTTGAGTTCAGAGATGATTAGTTCTGGGCAGAGCAAAAGATTCCATCTTTCAGAACCAAATGGTGAGAAGATTCGAGCTTCAACATCAGGGGAAGATGGGCAAATCATCAACAACATAAAGGAGGAGATGGAGAGGAAGATATCCATAGAGACAAAGTTGGGCGCGTTAAACTCTGTTTTAGATACTTCAGATTGTGCAGGAACTTCATCATCTTCAAGTCATACGTCAAAATATGTGAATCCGAGGGAGAAAAGATCGATGTCGGAAATCACTGGTGTGTCTAGATTTGGAGATTTGGCTATGATAAGAGACAGAGTGTTGAGGGATTCTTCAATGATTGCAAGTGATGTTAAAGAGGAAAGAAGGAGACAGCTATGGCTCCCAATCGCCAGAAAAACTGTTCAATGGTTTGTGAATAGAGAAAGATCTCAGCCATTAAATGTATAG 1257 0.4097 MGLLSLSLLFLLFFHVTAQQQMNDSAPSLDGIANFQPSLAVVIGILCLMFSLTFILLMYAKFCQRRASAHVDPENLPELVRSRSRRFSGIDKTVIESLPFFRFSALKGSKEGLECAVCLSKFEDIEILRLLPKCKHAFHIDCIDHWLERHSSCPLCRRKVNSDDPTMLTYSNSLRLLITNQSENNGEEPNIEIFVQREEERHGSSRFRIGSSLRKSGKGIIKEEELPIQEEETEHDGGGKLYHRHNHKITISDVVFKHRWSNVSSSDLMCLSSEMISSGQSKRFHLSEPNGEKIRASTSGEDGQIINNIKEEMERKISIETKLGALNSVLDTSDCAGTSSSSSHTSKYVNPREKRSMSEITGVSRFGDLAMIRDRVLRDSSMIASDVKEERRRQLWLPIARKTVQWFVNRERSQPLNV 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1761 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 165 IPR013083 -
Lele07g1761 418 SMART ring_2 115 156 IPR001841 -
Lele07g1761 418 MobiDBLite consensus disorder prediction 334 353 - -
Lele07g1761 418 SUPERFAMILY RING/U-box 94 163 - -
Lele07g1761 418 FunFam RING-H2 finger protein ATL43 90 164 - -
Lele07g1761 418 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 412 - -
Lele07g1761 418 CDD RING-H2_PA-TM-RING 114 157 - -
Lele07g1761 418 Pfam Ring finger domain 114 157 IPR001841 -
Lele07g1761 418 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1761 Lele-ChrLele07 11005085 11006341 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1761 3 418 C3H Transcription Factor Family AT4G28890 45.125 8.46e-103 310