Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1713 ATGCCGGAGATGTACTCTCCTTACTCCATGAGTGGCATGTCTGCCAACTCCGATGGCGATGCCAGCGGCGGCGATTACTCTCCGTACTACCTGCAAGAAGCGTTGACGGCACTCCAGCGTTATCTTCCGTCGAACGACGCAGATATCGACTCCGACTCCGAGATTCTGGGTCGAGAGTTGGACGCTCCGGTGGATGCCTACTCCTGCGACCATTTCCGCATGTTCGAGTTCAAGGTGAGGAGGTGCGCACGTGGCCGGTCACACGACTGGACTGAGTGTCCTTATGCTCATCCTGGCGAGAAGGCTCGCCGTAGGGATCCGAGGAAGTATCACTATTCGGGTACTGCATGCCCGGATTTCCGCAAAGGGAATTGTAAGAAGGGAGATGCATGCGAGTTTGCTCATGGCGTGTTTGAGTGTTGGCTTCATCCAGCCCGTTATCGTACACAGCCATGCAAGGACGGCACGGGTTGCCGCCGAAGGGTCTGTTTCTTCGCTCACACGCCGGAGCAACTCCGGGTCCTTCCTCAGCAGAGTCCTAGGAGTGTTAACTCGGGGGACTCCTATGATGGGTCTCCTCTCAGGCAAGCAATTGAGTCTTCTTGCGCAAAATCACTTCCATTTATGTCGTCTCCGGGTTCTATTTCCCCTCCAGCAACTCCTCCGGCAGAATCTCCTCCTTTGTCGCCGATGACACAGTCTCTGAGCCGCTCTCTGGGTTCGAGCTCCATCAATGAGATGATGACTTCCCTGCGTAATTTACAGCTTGGAAAGGTAAAGTTACTGCCCCCTTCTAGAAATGTTCCAATGGGGTCTCCCCGTTTTGGATCTCCACGTGGATCGGTGCTCCGTCCAGATTTCTACAGCCTCCCGTCAACCCCTACTGAGGCACCGACTCGTTCTGGTGCCAGCTATTTCGATCTTTGGGATCAGAATTGTGAGGAGGAGCCTGCCATGGAGAGGGTGGAATCTGGAAGGGGCATAAGGGCGAAGATATTTGAGAAACTTAGTAAAGAGAACTCTCTGGGTCGATAG 1035 0.542 MPEMYSPYSMSGMSANSDGDASGGDYSPYYLQEALTALQRYLPSNDADIDSDSEILGRELDAPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGNCKKGDACEFAHGVFECWLHPARYRTQPCKDGTGCRRRVCFFAHTPEQLRVLPQQSPRSVNSGDSYDGSPLRQAIESSCAKSLPFMSSPGSISPPATPPAESPPLSPMTQSLSRSLGSSSINEMMTSLRNLQLGKVKLLPPSRNVPMGSPRFGSPRGSVLRPDFYSLPSTPTEAPTRSGASYFDLWDQNCEEEPAMERVESGRGIRAKIFEKLSKENSLGR 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1713 344 MobiDBLite consensus disorder prediction 209 240 - -
Lele07g1713 344 MobiDBLite consensus disorder prediction 1 24 - -
Lele07g1713 344 MobiDBLite consensus disorder prediction 175 194 - -
Lele07g1713 344 FunFam Zinc finger CCCH domain-containing protein 66 69 137 - -
Lele07g1713 344 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 116 136 IPR000571 GO:0046872
Lele07g1713 344 SMART c3hfinal6 111 137 IPR000571 GO:0046872
Lele07g1713 344 SMART c3hfinal6 146 169 IPR000571 GO:0046872
Lele07g1713 344 ProSiteProfiles Zinc finger C3H1-type profile. 112 138 IPR000571 GO:0046872
Lele07g1713 344 Gene3D - 112 175 - -
Lele07g1713 344 PANTHER UNKEMPT FAMILY MEMBER 33 343 IPR045234 -
Lele07g1713 344 MobiDBLite consensus disorder prediction 214 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1713 Lele-ChrLele07 10665077 10666111 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1713 61 175 C2H2 Transcription Factor Family AT5G12850 70.435 6.05e-58 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele07g1713 zf-CCCH 3.3e-06 CL0537