Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1627 ATGGCGACGAATAGATTCGTGTGCGAGATATGCAACAAGGGGTTTCAGAGGGACCAGAACCTACAGCTGCACAGAAGAGGACACAATCTGCCATGGAAGCTGAGGCAAAGGCCCAGCACGGAGGTGAAGAAGAGGGTGTACGTGTGCCCTGAGCCCTCGTGCGTGCACCATAACCCAGCTCGAGCACTCGGAGACCTCACAGGGATCAAGAAGCATTACAGCAGAAAGCATGGCGAGAAGAAGTGGAAGTGTGATAAGTGCTCCAAAAGATACGCCGTCCAATCTGACTGGAAGGCCCACCAAAAAACCTGCGGTACCAGAGAATACAAATGCGATTGTGGCACCATTTTTTCCAGGAGAGATAGCTTCATCACCCATAGGGCTTTTTGTGACGCTTTAACTGAAGAAAACAACAGAATGAACCAAGGATTAAGCAGTGGCTTGCAATCAAACTTGCAAACTCAGGGGCCAGCTGATCTCATGCCCACTATGCCCCTCACCACCTCCTCCGACTTCAACCACCCACTCCGGACCCTCTCTCAGGACCTCTGCCCAAGCCCATTTAAGCCCATGAGCATGGGCGGGCCCATGTTCTCCGCAACATCCGGATCCCTCTTCGCTGGCCCAAAGCCCATCTATCCCTCCTCCTCCTCCGCGCTCCAGCTCAGCTCCAACACTTCCTCTCCCACTTTCGGTTACTTCCCGGACCGCAAAAACATGGGCCCAATGATTTCTGGGTCGGCCCAAATGTCTGCAACGGCTTTGTTACAGAAAGCGGCCCAAATGGGTGCTACCGCAAGCAACAACAGCATCAACTCTCCCATGAAGCAAAAGAACTTGGTCACTGTTATGGCTGGTCCTGATCATAATAATGCCTCTGCTTCCATTAGTAAACCACCATTTTCAGCTGCTGAACCTTCCTCCTTCCATCACTTCCAATCCAACGTGGCTGGGGTTAGTGGCAGTGGTGGAACACTCCCCAATCAACTGTTTCATAGAGTCCCACAAGAAATTTCAGAACTGTTTGACGCTACTGATGGTGCTGCTTCTGCTGCTACTGGATCTGCAATTTCTGGTATGGGTATGTTCAGCCAGAATTTCCTTGCAAGTGATCATCAGAACCCAGCAGGATTGATAATGAAAAGCCACGTGGAACGAGACAACGGTACCACCAGTTCAGGTTTGATAATGCATGGGAGAGATGTAGGAGAAGAGAATCCAATGGGGCCAAATATGGCAACGGTTCATGATTTCTTGGGTGTTGGGGGTTCGGCGAATTTTCATGAACCAGAGCAACAAAGGTTGGAGTTAGACGCCATGAACCACCAGAGAGTATCATTTATGAATCATCACTTTCAACACCATCTTCCTCATGGAGATTCACCTTTGGATAAACCCATTTGGGATGTTTGA 1413 0.4996 MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRPSTEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRMNQGLSSGLQSNLQTQGPADLMPTMPLTTSSDFNHPLRTLSQDLCPSPFKPMSMGGPMFSATSGSLFAGPKPIYPSSSSALQLSSNTSSPTFGYFPDRKNMGPMISGSAQMSATALLQKAAQMGATASNNSINSPMKQKNLVTVMAGPDHNNASASISKPPFSAAEPSSFHHFQSNVAGVSGSGGTLPNQLFHRVPQEISELFDATDGAASAATGSAISGMGMFSQNFLASDHQNPAGLIMKSHVERDNGTTSSGLIMHGRDVGEENPMGPNMATVHDFLGVGGSANFHEPEQQRLELDAMNHQRVSFMNHHFQHHLPHGDSPLDKPIWDV 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1627 470 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Lele07g1627 470 FunFam Zinc finger protein MAGPIE 2 29 - -
Lele07g1627 470 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 438 IPR031140 -
Lele07g1627 470 SMART c2h2final6 47 77 IPR013087 -
Lele07g1627 470 SMART c2h2final6 6 28 IPR013087 -
Lele07g1627 470 SMART c2h2final6 82 102 IPR013087 -
Lele07g1627 470 Gene3D Classic Zinc Finger 2 29 - -
Lele07g1627 470 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Lele07g1627 470 Gene3D Classic Zinc Finger 61 140 - -
Lele07g1627 470 FunFam protein indeterminate-domain 5, chloroplastic-like 60 139 - -
Lele07g1627 470 SUPERFAMILY beta-beta-alpha zinc fingers 5 103 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1627 Lele-ChrLele07 10075887 10078476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1627 1 271 IDZ Gene Family AT3G50700 55.254 1.96e-95 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele07g1627 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g1627 07 10075887 10078476 Lele07g1627 07 10075887 10078476 ECH
Lele05g1570 05 10073101 10075456 Lele07g1627 07 10075887 10078476 hybridization