Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1624 ATGGAGTTGTACGGTCGGAACCCGGCTAGGAATGGGTCGCAACTGGGTAATCAATCTGAATGGCACCCATCAGGCGGCGAAACTGGGCTTGAAGAATCGGTTTGGCACTTAATCATCGGCAGCAGCGAATCTTACCCGGAGCGACCCGGCGTACCCAATTGTATTGTTCTTTATGATCTTTACATTGTAGATTCCTGGAATTGCCTCCCACTTTTCACTTTCTCTGGCCCATTGTTGTTGGGTGAGAAAGAATGCTCCTATTATTTGAAGACGGGGCAGTGCAAATTTGGTATAACTTGCAAATTCCATCATCCTAATCCAGCTGGCACATCAATGCCAGCATCGGCACCTCAATTTTATCAACAGGGTGCTTATGGTCCCGTCCTTCTTTCTCCAGGGGTTGTTCCCTTTCCAGGATGGAGTCCTTATACGGCACCTTTGAGTCCTGTGTTGTCTCCTGGTGCTCAATCTGCTGTTGGGACTACTTCTCTGTATGGAGTGACCCAGTTGTCTTCATCAACATCAGCTTTTGCTAGACCATATACTCCTCTTCCTTCGATTACTGGCCTTTCAGGCAGTGGCTTGAAGGAACAAATATTTCCTGAAAGACCTGGTGAACCTGAATGCCAATACTATCTGAGAACAGGGAACTGCAAATATGGATTGGCATGTCGATATCATCATCCCAGGGACCAGACTGTGACCCGTCCACTTCTCAGCCCCATTGGTCTTCCTTTACGTCCGCATGTTTTGAGAGGTCATAAGAAATGGAACAAAGAATGTTATTGGATGTTATTTGTTGCCATTAGGATTATTATTGATAGAATGTTGGAGTTCAGATACAGTCCATCAGCATCCTCCCTCACTGATATGCCAGTAACCCCATACCCTGTCGGATCCTTGCTGTCTACCCTGGCTCCTTCAACATCTCTGGAGCTTCGGCCTGAACTGATGTCAGGCTCAGAAGTGGAATCTTTTGCTTCTAGAATGCCATCCCCTGGAAATGGTTTAAGCAATTCTGTGAGTTTAATTTTCTCACAAGGTGGAACCGTCTCTCTTTCTGATGTGCCACTCTCAAGTCAAAGCCCTACTCCTTTAAGCAGTAGCGGAAGCACTAGACAAATTGGTGACATACGATGA 1140 0.464 MELYGRNPARNGSQLGNQSEWHPSGGETGLEESVWHLIIGSSESYPERPGVPNCIVLYDLYIVDSWNCLPLFTFSGPLLLGEKECSYYLKTGQCKFGITCKFHHPNPAGTSMPASAPQFYQQGAYGPVLLSPGVVPFPGWSPYTAPLSPVLSPGAQSAVGTTSLYGVTQLSSSTSAFARPYTPLPSITGLSGSGLKEQIFPERPGEPECQYYLRTGNCKYGLACRYHHPRDQTVTRPLLSPIGLPLRPHVLRGHKKWNKECYWMLFVAIRIIIDRMLEFRYSPSASSLTDMPVTPYPVGSLLSTLAPSTSLELRPELMSGSEVESFASRMPSPGNGLSNSVSLIFSQGGTVSLSDVPLSSQSPTPLSSSGSTRQIGDIR 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1624 379 ProSiteProfiles Zinc finger C3H1-type profile. 79 107 IPR000571 GO:0046872
Lele07g1624 379 SUPERFAMILY CCCH zinc finger 207 232 IPR036855 GO:0046872
Lele07g1624 379 MobiDBLite consensus disorder prediction 10 24 - -
Lele07g1624 379 ProSiteProfiles Zinc finger C3H1-type profile. 203 231 IPR000571 GO:0046872
Lele07g1624 379 SMART c3hfinal6 203 230 IPR000571 GO:0046872
Lele07g1624 379 SMART c3hfinal6 81 106 IPR000571 GO:0046872
Lele07g1624 379 PANTHER PROTEIN PHOSPHATASE RELATED 77 249 - -
Lele07g1624 379 MobiDBLite consensus disorder prediction 1 27 - -
Lele07g1624 379 MobiDBLite consensus disorder prediction 355 379 - -
Lele07g1624 379 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 205 230 IPR000571 GO:0046872
Lele07g1624 379 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 82 105 IPR000571 GO:0046872
Lele07g1624 379 Gene3D - 67 122 - -
Lele07g1624 379 Gene3D - 201 264 - -
Lele07g1624 379 SUPERFAMILY CCCH zinc finger 80 106 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1624 Lele-ChrLele07 10043261 10047317 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1624 177 325 C2H2 Transcription Factor Family AT5G18550 31.098 3.34e-13 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele07g1624 zf-CCCH 3.7e-09 CL0537