Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1623 ATGGAGCTGTACGGTCGAAACCCGGCTAGGAATGGGTCTCAACCGGGTAATCAACCTGAATGGCACCCATCTGGCGCCGAAACTGGGCTCGAAGAATCGATGTGGCACTTAACCATCGGTGGCAGCGAATCTTACCCGGAGCGACCCGGCGTACCTAATTGTGTGTATTACATGCGAACCGGGTTCTGTGGATACGGTTGCAGGTGCCGTTACAATCATCCTCGTGATCGTGCCGCGGTTGCAGCAGCTGTGAGAGCTACAGGGGAGTATCCAGAACGAGTGGGAGAACCTTCATGTCAGTATTATTTAAAAACGGGAACCTGCAAATTTGGTGCATCCTGTAAATTTCACCATCCAAAACACGGAGGTGGATCATTAAGTCAAGCTCCATCAAATATTTATGGATACCCGTTACGTTCGGGTGAGAAAGAATGCTCCTACTATTTGAAGACGGGGCAGTGCAAATTTGGTATAACTTGTAAATTCCATCATCCTAATCCAGCTGGCACATCAATGCCAGCATCAGCACCTCAGTTTTATCAACAGGTGCAGTCTCCTACGGTCCCTCTAGCTGAACAGTATGGGGGGGCATCCAACAGTTTGAGAGTGGCTAGCCCTTCAATATTGCCTGGTTCATATGTGCAAGGAGCTTACGGTCCTGTCCTTGTTTCTCCTGGGGTTGTTCCCTTTCCGGGTTGGAGTCCTTATACGGCACCTGTGAGTCCTGTGTTATCTCCCGGTGCCCAATCTGCTGGGGCTACTTCTCTGTATGGAATGACCCAGTTGTCTTCATCAACATCAGCTTTTGCTAGACCATATACTCCACTTCCATCTACTACTGGCCTTTCAGGCAGTGGCCTGAAGGAACCAATATTTCCTGAAAGACCTGGTGAACCTGAATGCCAATACTATCTGAGAACAGGGGACTGCAAATATGGATTAGCATGTCGATATCATCATCCCAGGGACCAGACCGTGAACCGGCCACTTCTCAGCCCCATTGGTCTTCCTTTACGTCCGGGGATCTTTTGCAGCAATACATCTTCAGAGCTTCGGCCTGAACTGATGTCAGGCTCAGAAGTGGAATCTTTTTCTACTAGAATGCCATCCTCTGGAAATGGATCAAGCAATTCTGTCAGTTTAATTTTCTCACAAGGTGGAACCGTCTCTCTTTCTGATGTGCAACTCTCAAGTCAAAGCCCTACTCCTTTAAGCAATAGCAGAAGCACTAGACAAAGTGGCGACATACGATGA 1254 0.4848 MELYGRNPARNGSQPGNQPEWHPSGAETGLEESMWHLTIGGSESYPERPGVPNCVYYMRTGFCGYGCRCRYNHPRDRAAVAAAVRATGEYPERVGEPSCQYYLKTGTCKFGASCKFHHPKHGGGSLSQAPSNIYGYPLRSGEKECSYYLKTGQCKFGITCKFHHPNPAGTSMPASAPQFYQQVQSPTVPLAEQYGGASNSLRVASPSILPGSYVQGAYGPVLVSPGVVPFPGWSPYTAPVSPVLSPGAQSAGATSLYGMTQLSSSTSAFARPYTPLPSTTGLSGSGLKEPIFPERPGEPECQYYLRTGDCKYGLACRYHHPRDQTVNRPLLSPIGLPLRPGIFCSNTSSELRPELMSGSEVESFSTRMPSSGNGSSNSVSLIFSQGGTVSLSDVQLSSQSPTPLSNSRSTRQSGDIR 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1623 417 Gene3D - 50 125 - -
Lele07g1623 417 Gene3D - 288 349 - -
Lele07g1623 417 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Lele07g1623 417 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Lele07g1623 417 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Lele07g1623 417 SUPERFAMILY CCCH zinc finger 141 166 IPR036855 GO:0046872
Lele07g1623 417 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Lele07g1623 417 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 297 322 IPR000571 GO:0046872
Lele07g1623 417 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 165 IPR000571 GO:0046872
Lele07g1623 417 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Lele07g1623 417 SUPERFAMILY CCCH zinc finger 97 120 IPR036855 GO:0046872
Lele07g1623 417 MobiDBLite consensus disorder prediction 392 417 - -
Lele07g1623 417 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Lele07g1623 417 MobiDBLite consensus disorder prediction 354 379 - -
Lele07g1623 417 PANTHER PROTEIN PHOSPHATASE RELATED 38 348 - -
Lele07g1623 417 ProSiteProfiles Zinc finger C3H1-type profile. 295 323 IPR000571 GO:0046872
Lele07g1623 417 SUPERFAMILY CCCH zinc finger 299 324 IPR036855 GO:0046872
Lele07g1623 417 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Lele07g1623 417 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Lele07g1623 417 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Lele07g1623 417 SMART c3hfinal6 295 322 IPR000571 GO:0046872
Lele07g1623 417 Gene3D - 126 172 - -
Lele07g1623 417 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1623 Lele-ChrLele07 10037788 10041637 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1623 1 341 C2H2 Transcription Factor Family AT5G18550 51.111 3.01e-113 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele07g1623 zf-CCCH 4.1e-09 CL0537