Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1613 ATGAGTGATTCTCCGAAGCACCCACATCTACCGGATAACGATCAAGCACCGAAAGCTCAAAGGCCATGCGACTACTGTGGCAATTCCACTGGTATTCTCTACTGTCGAGCTGATTCTGCCAAGCTGTGTTTCTCTTGTGATCGTGAAGTTCACTCTACCAACCAACTCTTCTCGAAGCACACTCGAGCTCTGCTCTGTGATGCCTGCAACGAATCGCCGGCCACAATACTCTGTTCTACCGAAAGCTACGTTTTCTGCCAGAATTGTGATTGGGAACGGCACAACCTTTCGATGCCTTTGGTGCACGATAGGAGGCCACTTGAGGGCTTCACTGGGTGTCCTTCCGTGAGTGAGTTGTTATCGATTCTCGGTTTTGAAGATTTGGGCAAGAAAGCCCTGTTTTCGACTGAGGATTGTGGAGGATGTGGCGGCACCGGTGGCTATGGGTTAGTGGGATCTGAGCTTGACGAGGGCCTTTCGGATTTGTTTGTATGGGACGCTCCTGCTGTTGTTAGCCTTGACGATTTGATAACTTCTACAAGCTCGTCTCACAATTATCAGGCCATGGAGGTTCCTCCTCTACCTAAGCATTCTTCTGGCTTAAGAGATCATAAGTTATGGTACTGCCAACTAGTAAGGATATTGTTGTTGAATCAGAACCGTAAGGCTGCTTGTGGGCTACACAAGGAAGAAATCATTAGTCAGCTTCGTGAGCTAGCAAAGTTGGAGCCCAGCTTGAATTTTGGAGATATAGATACTGAACCACTGAGCTCCAAGCACCCTATTGTCCCTGAACAGTATTTACAGTCGGCAAGCTTGTCCACAGGTTTTGAACATGAATTCGAGGCTGATACTTTTCCTTCATACGAGACAAATGTTTTTAAGGGTACTAGAGATAGTGAGACTGGAAATCAAATTGTTCCTCCTAATAATAATACATCGTTGTATAAAGAGGAAGTCCTTGATTTTCATTCAGTTTCCACTGTCTGTGGGAGTCATAACTATCTTAACAATGGTGGACAAGTGCCAAACTGTTTTAGCTCCGAAAACTTATCGACCACTCCAAAAGTTGCTTCATATGAGCTGACAAGTCAAGAAAGAGACTCTGCATTATTACGTTACAAGGAGAAGAAGAAAACAAGAAGATATGACAAGCACATAAGAATCAAACACTTAGAATCACATGTTGTTCCTTTGCTAGAGCTAGAAGAAGCGATAGAAGTAGTTTTCACACGATCATTTCGCTTAGAAATTAACCAACATTGGCTGGTTTTACTGTCTCATGATTGGAGTCCTAGGTTTTCTGCCAAAACCAGAAACATTCCAGAGCAGATTTCTCTGAAGTTGCTGTGA 1353 0.4405 MSDSPKHPHLPDNDQAPKAQRPCDYCGNSTGILYCRADSAKLCFSCDREVHSTNQLFSKHTRALLCDACNESPATILCSTESYVFCQNCDWERHNLSMPLVHDRRPLEGFTGCPSVSELLSILGFEDLGKKALFSTEDCGGCGGTGGYGLVGSELDEGLSDLFVWDAPAVVSLDDLITSTSSSHNYQAMEVPPLPKHSSGLRDHKLWYCQLVRILLLNQNRKAACGLHKEEIISQLRELAKLEPSLNFGDIDTEPLSSKHPIVPEQYLQSASLSTGFEHEFEADTFPSYETNVFKGTRDSETGNQIVPPNNNTSLYKEEVLDFHSVSTVCGSHNYLNNGGQVPNCFSSENLSTTPKVASYELTSQERDSALLRYKEKKKTRRYDKHIRIKHLESHVVPLLELEEAIEVVFTRSFRLEINQHWLVLLSHDWSPRFSAKTRNIPEQISLKLL 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1613 450 SMART bboxneu5 18 65 IPR000315 GO:0008270
Lele07g1613 450 SMART bboxneu5 66 107 IPR000315 GO:0008270
Lele07g1613 450 CDD Bbox1_BBX-like 22 65 - -
Lele07g1613 450 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 22 389 - -
Lele07g1613 450 ProSiteProfiles Zinc finger B-box type profile. 18 65 IPR000315 GO:0008270
Lele07g1613 450 Pfam B-box zinc finger 20 62 IPR000315 GO:0008270
Lele07g1613 450 ProSiteProfiles Zinc finger B-box type profile. 61 107 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1613 Lele-ChrLele07 9975712 9979010 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1613 14 382 C2C2-CO-like Transcription Factor Family AT2G47890 37.197 2.84e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele07g1613 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2052 13 27655437 27656000 Lele07g1613 07 9975712 9979010 CCT
Lele14g1983 14 25986876 25992603 Lele07g1613 07 9975712 9979010 CCT
Lele15g0354 15 2023155 2023628 Lele07g1613 07 9975712 9979010 CCT
Lele16g0372 16 2038954 2039517 Lele07g1613 07 9975712 9979010 CCT
Lele07g1613 07 9975712 9979010 Lele07g1613 07 9975712 9979010 ECH
Lele05g1557 05 9972488 9974432 Lele07g1613 07 9975712 9979010 hybridization
Lele06g1403 06 9030073 9032016 Lele07g1613 07 9975712 9979010 hybridization