Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1598 ATGGCGGAGGGGCAGGAGGAGAGAACATCTAGCAGCGAGGAGAGTGTGAAATTGTTCGTGGGTCAAGTGCCCAAACATATGACTGAGGCCGAACTTCTTGCAATGTTCCAGGAGTTTGCTCTGGTAGACGAGGTCAACGTCATCAAGGACAAAGTCACTCGCTCCTCTCGAGGTTGTTGCTTTGTGATTTGTCCGTCGAGGCAAGAAGCAGACAAGGCGGTCAATGCGTGTCATAACAAGAAGACACTACCTGGGGCATTGAGTCCATTGCAAGTGAAGTATGCGGATGGCGAGTTGGAAAGACTAGAGCACAAACTCTTTATTGGCATGCTTCCAAAGAATGTTTCTGAAGCTGAAGTCTCCGCTCTTTTCTCCATGTATGGAACCATAAAGGATATTCAGATCTTGAGAGGTTCTCAGCAAACGAGTAAAGGCTGTGCATTTTTGAAGTATGAAACCAAAGAACAGGCCCTTGCTGCTCTGGAGGCAATCAATGGAAAACATAAGATGGAGTATCCAATTTTACTGTTTTTTTTTGGAATACAAAGGCAAGCAAAGCTTGAAAAGAAAAGAAAAGAAAACCCAAACCCTAGTATTTTGGACCTTCAAGCGGCATTCAGCCACAAAATCCTGTTGGGTTCAAGTGTTCCTTTGGTGGTCAAATGGGCAGATACAGAAAAGGAAAGACAAGCTCGGAGGGCTCAGAAAGCACAGTCCCAAGCTTCTAATGGCACGCATAGTGATTCTCAGCATCAGTCATTGTTTGGAGTCTTGCCAATGGGTTATGTTCCACAATATAATGGATATGGCTATCAGGCTCCTGGGGGTTATGGGCTCATGCCATACCGCTTGCCACCATTGCAGAATCAACCTGGTTACCATAATATGATGCCTCACATGAATCAAGGAAATCCATTGGGTCCTGAACTTGGTCCCAATATGAACCCTAGAAATTATCCCGTGCCTCCTGGAAGTTATTATGGTTCTTACCCTGCAGTCCCAGGTATGCAGCATCCCATGGCATATCCTGGAGGAGTGATAAGTCCTAGGCCTGTGAGTAGCTCTCCCGGTTCAGTTTCACCTGCAGGTGGAAGTGGCAACTCTTCTACATCTTCAGGTGCCAATAAAAATTCCAGTAGTCAGGTTGAAGGACCACCTGGTGCCAATCTCTTTATTTATCACATACCTCCTGAATATGGAGATCAAGAGCTGGCAAATGCGTTTCAGCCATTTGGTAGGGTTTTGAGTGCCAAAGTGTTTGTCGATAAAGCAACCGGTGTAAGCAAATGTTTTGGGTTTGTAAGTTATGAATCTCCAGAAGCTGCACAAGCCGCCATTAGTATGATGAATGGATTCCAATTAAGTGGTAAGAAATTAAAGGTTCAGCTTAAGAGGGACAACAAGCAGAATAAGCCTTACTGA 1422 0.4508 MAEGQEERTSSSEESVKLFVGQVPKHMTEAELLAMFQEFALVDEVNVIKDKVTRSSRGCCFVICPSRQEADKAVNACHNKKTLPGALSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSMYGTIKDIQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEYPILLFFFGIQRQAKLEKKRKENPNPSILDLQAAFSHKILLGSSVPLVVKWADTEKERQARRAQKAQSQASNGTHSDSQHQSLFGVLPMGYVPQYNGYGYQAPGGYGLMPYRLPPLQNQPGYHNMMPHMNQGNPLGPELGPNMNPRNYPVPPGSYYGSYPAVPGMQHPMAYPGGVISPRPVSSSPGSVSPAGGSGNSSTSSGANKNSSSQVEGPPGANLFIYHIPPEYGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYESPEAAQAAISMMNGFQLSGKKLKVQLKRDNKQNKPY 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1598 473 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 97 IPR000504 GO:0003723
Lele07g1598 473 MobiDBLite consensus disorder prediction 235 250 - -
Lele07g1598 473 MobiDBLite consensus disorder prediction 351 385 - -
Lele07g1598 473 FunFam RNA-binding protein BRN1 3 100 - -
Lele07g1598 473 MobiDBLite consensus disorder prediction 230 250 - -
Lele07g1598 473 CDD RRM3_CELF1-6 390 462 - -
Lele07g1598 473 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 388 466 IPR000504 GO:0003723
Lele07g1598 473 Gene3D - 101 234 IPR012677 -
Lele07g1598 473 MobiDBLite consensus disorder prediction 344 385 - -
Lele07g1598 473 Gene3D - 363 472 IPR012677 -
Lele07g1598 473 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 192 IPR000504 GO:0003723
Lele07g1598 473 SMART rrm1_1 389 462 IPR000504 GO:0003723
Lele07g1598 473 SMART rrm1_1 105 177 IPR000504 GO:0003723
Lele07g1598 473 SMART rrm1_1 17 93 IPR000504 GO:0003723
Lele07g1598 473 CDD RRM1_2_CELF1-6_like 17 93 - -
Lele07g1598 473 PANTHER RNA BINDING PROTEIN 15 467 - -
Lele07g1598 473 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 170 IPR000504 GO:0003723
Lele07g1598 473 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 81 IPR000504 GO:0003723
Lele07g1598 473 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 390 460 IPR000504 GO:0003723
Lele07g1598 473 CDD RRM1_2_CELF1-6_like 105 171 - -
Lele07g1598 473 SUPERFAMILY RNA-binding domain, RBD 104 470 IPR035979 GO:0003676
Lele07g1598 473 SUPERFAMILY RNA-binding domain, RBD 9 99 IPR035979 GO:0003676
Lele07g1598 473 FunFam RNA-binding protein BRN1 355 465 - -
Lele07g1598 473 Gene3D - 2 100 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1598 Lele-ChrLele07 9885564 9890232 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1598 389 471 Eukaryotic Initiation Factors Gene Family AT4G34110 37.500 2.91e-09 57.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g1598 07 9885564 9890232 Lele07g1598 07 9885564 9890232 ECH
Lele05g1542 05 9882578 9887143 Lele07g1598 07 9885564 9890232 hybridization
Lele06g1390 06 8941960 8946549 Lele07g1598 07 9885564 9890232 hybridization