Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1551 ATGGCTTTTCACTCCTCCTTCGCCGGTCCTTCTGGAGTTCGAGTCGCCGTCATCGGTGACCGAGGTACCGGCAAATCCAGCTTGATAGCTGCCGCGGCTTCTGAGGCCTTCCCTGACACCGTCCCCCCTGTCCTTCCTCCGACTCTGTTGCCTGATGACTGGTTCCCCGATCGTCTTCCGCTTGCCATCATTGACACACCTTCCAGCTTGGAAAAACGGGGCAAGCGCAATGAAGAATTGAAGCGATCTGATGTAGTGGTTTTGACATATGCTTGTGATGAACCGACGACCATTACTCGGCTTAGTACTTACTGGCTACCTGAACTGGAGGAGTTGGAGGTAAAAGCACCTGTAGTTGTGGTTGGCTGCAAGCTAGATCTTCAGGACGAGAATCAGCAAATAAACTTAGAGAATCTCATGACGCAGCTCCTACAACAGTACGGTGACATTGTGACCTGTATGGAATGCTCTGCAGCTACACTATATCAGGTCCCTGAAGTATTTTATTTTGCTCAAAAAGCAGTACTGCATCCAGTGGATCCATTGTTTGATCATGAGAGGCAAGCTTTAACAGATAGATGTTTAAGGGCACTGAGAAGAATTTTTGTTCTCTGTGATAAAGATATGGATGATGCCCTCAATGATGCAGAGCTAAATGGATTTCAGGTTAGATGTTTTGACATGCCATTGCAGCCATCTGAAATAATGGAAGTCAGAACGCTTATTCAGCAGCAATCACCTGAGGGAATCAACCGACATGGCCTTACTTTTCTAGGCTTTGTTTATATCCATAATATGTTCCTGAAGAAAGGGCGTCCTGAGACAATATGGGCTGTTCTAAGAAAATTTGGATATAACAATGATTTAAAACTCCGAGATGATTTCCTTCCCGTTCCATCTAACTACACATCTGATCAGAGAGTGGAGCTGACAATTGAAGCTGTAGAATTTCTGAATGGTATCTTCCGATTGTTAGATACGGATAGAGACCGGGCCCTACAACCTGCAGAACTTGATAAGCTATTTTCTACTGCCCCAGAAAGTCCATGGAGTGATGATCCATATAAGGATGCTGTTGAGAGAACTAATGCAGGCTACATGACTCTTGGTGGATTTCTGTCTCAGTGGGCTCTCATGACATTACTTGATCCACCATCTAGCCTGGCCAATTTGATTTACATTGGATATAGTGGCAATCCTGTTGCAGCACTCCGTGTTACTTGTAGGAGATCAGTAGATCGTAAGAAACAAAAAACAGGAAGAAATGTGTTCCAGTGCCATGTCTTTGGTCCTAAAAATGCTGGGAAATCTACTTTATTATATTCATTTTTGAGAAGGCCTTTCTCTGATAAATATACTCCGACAGTGGTTGAGCAATATGCTGCAAATATTGTTGAATTAATTGGGGGGACTAGAAAAACTCTTATTTTACGGGAGATACCTGAGGATGAAGTAAAGAAATTTTTGTCAAATCAGGATTGTTTGGCAGCATGTGATGTTGCTGTTTTTGTATATGACGGTTCAGATGAACATTCGTGGAAAAGAACCAGAGAATTGCTTGAGGAAGTTTCTAGACAAGGAGAATTAACTGGTCATAGAGTTCCTTGCCTTCTCATTGCTACTAAGGATGACTTAACTCCCTACCCAAGGGCAGTGCAAGATTCAGTGAAGGAATTTGGGATAGAGGCGCCCATTCATGTAAGTATGAAATTAGGTGATTCAAGCAATGTGTATGATAAGATTGTTAGTGCTGCAGAACACCCTCATTTGAATATTCCTGAAACTGATATTGGGAGGAAGAGAAGGCTGTACCATCAGCTTCTTCATCACACTCTTGTATTTGCCTCAGTTGGGGCTGCCATGGCAGTTGTCGGTTTAGCAGCTTTTCGTGGATATGCGATAAAGAAAAATTCTGCTTAG 1920 0.4318 MAFHSSFAGPSGVRVAVIGDRGTGKSSLIAAAASEAFPDTVPPVLPPTLLPDDWFPDRLPLAIIDTPSSLEKRGKRNEELKRSDVVVLTYACDEPTTITRLSTYWLPELEELEVKAPVVVVGCKLDLQDENQQINLENLMTQLLQQYGDIVTCMECSAATLYQVPEVFYFAQKAVLHPVDPLFDHERQALTDRCLRALRRIFVLCDKDMDDALNDAELNGFQVRCFDMPLQPSEIMEVRTLIQQQSPEGINRHGLTFLGFVYIHNMFLKKGRPETIWAVLRKFGYNNDLKLRDDFLPVPSNYTSDQRVELTIEAVEFLNGIFRLLDTDRDRALQPAELDKLFSTAPESPWSDDPYKDAVERTNAGYMTLGGFLSQWALMTLLDPPSSLANLIYIGYSGNPVAALRVTCRRSVDRKKQKTGRNVFQCHVFGPKNAGKSTLLYSFLRRPFSDKYTPTVVEQYAANIVELIGGTRKTLILREIPEDEVKKFLSNQDCLAACDVAVFVYDGSDEHSWKRTRELLEEVSRQGELTGHRVPCLLIATKDDLTPYPRAVQDSVKEFGIEAPIHVSMKLGDSSNVYDKIVSAAEHPHLNIPETDIGRKRRLYHQLLHHTLVFASVGAAMAVVGLAAFRGYAIKKNSA 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1551 639 Pfam EF hand associated 229 312 IPR013567 -
Lele07g1551 639 Gene3D - 291 481 - -
Lele07g1551 639 ProSitePatterns EF-hand calcium-binding domain. 326 338 IPR018247 -
Lele07g1551 639 Gene3D - 185 289 - -
Lele07g1551 639 ProSiteProfiles EF-hand calcium-binding domain profile. 313 348 IPR002048 GO:0005509
Lele07g1551 639 SMART rho_sub_3 15 178 IPR001806 GO:0003924|GO:0005525
Lele07g1551 639 Pfam Ras family 15 175 IPR001806 GO:0003924|GO:0005525
Lele07g1551 639 Pfam Ras family 428 547 IPR001806 GO:0003924|GO:0005525
Lele07g1551 639 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 210 IPR027417 -
Lele07g1551 639 ProSiteProfiles Miro domain profile. 421 587 IPR020860 GO:0003924|GO:0005525
Lele07g1551 639 PANTHER RHO FAMILY GTPASE 425 569 IPR003578 GO:0005525|GO:0007264
Lele07g1551 639 FunFam Mitochondrial Rho GTPase 291 481 - -
Lele07g1551 639 ProSiteProfiles Miro domain profile. 10 177 IPR020860 GO:0003924|GO:0005525
Lele07g1551 639 FunFam Mitochondrial Rho GTPase 185 289 - -
Lele07g1551 639 Gene3D - 487 585 IPR027417 -
Lele07g1551 639 Gene3D - 11 180 IPR027417 -
Lele07g1551 639 FunFam Mitochondrial Rho GTPase 488 586 - -
Lele07g1551 639 Pfam EF hand associated 350 418 IPR013566 -
Lele07g1551 639 ProSitePatterns EF-hand calcium-binding domain. 206 218 IPR018247 -
Lele07g1551 639 CDD Miro2 421 596 - -
Lele07g1551 639 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 591 IPR027417 -
Lele07g1551 639 SMART rab_sub_5 13 178 - -
Lele07g1551 639 SUPERFAMILY EF-hand 182 378 IPR011992 -
Lele07g1551 639 PIRSF Miro 9 639 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0005741|GO:0007005
Lele07g1551 639 PRINTS Transforming protein P21 ras signature 114 127 - -
Lele07g1551 639 PRINTS Transforming protein P21 ras signature 13 34 - -
Lele07g1551 639 PRINTS Transforming protein P21 ras signature 153 175 - -
Lele07g1551 639 FunFam Mitochondrial Rho GTPase 10 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1551 Lele-ChrLele07 9559298 9566589 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1551 1 638 EF-hand Containing Proteins AT3G63150 58.658 0.0 801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g1551 07 9559298 9566589 Lele13g1999 13 27345881 27347497 CCT
Lele07g1551 07 9559298 9566589 Lele14g1931 14 25672658 25673497 CCT
Lele07g1551 07 9559298 9566589 Lele15g0407 15 2337441 2338622 CCT
Lele07g1551 07 9559298 9566589 Lele16g0432 16 2323134 2323862 CCT
Lele05g1491 05 9547122 9554154 Lele07g1551 07 9559298 9566589 hybridization