Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1544 ATGTCGAGTGCAATAATGTCGGCTAGAGACAAAAGACAGGAAATTGTGAATAGTATAGTGGACAGCGGAGCCGTTCCTTCTTTGTTAAAACATCTGAAAGCACCAGAACCAGTTAGAGAAGCAACCAGAGCATCCACACAACTCATTGTCGATGCTGGAGCTTTGCCCTGTCTTATGGATTTGTTGAAGAGGCACAAGACTTGTGCCAATTCACGGGCACTTACCGGCCTTATAAGGAGAGCAGCTGATGCCATCACAAACCTTGCGCACGAAAATAGCAGCATTGAAACCCGTGTTAGGATGGAAGGTGGTATCCCTCCTCTAGTTGAATGGCTTAAATTTGATGATACAAAGGACAAATCGGAACCGCGGATTTATCAACATATTATTGTTGGATGCAATGCACTGCCTATTCTTGTACTAATGCTTGGATCAGAGGATGCTGCAATACATTCTGAAGCAAATTTCAATGACAGATCTTGTTGTACGGAGGGTCAAAGAGAGGCAGCTCTTTTATTTGGTCAATTCGCTGCGACAGATTCTGATTGCAAGTTTCATATTGCTCAAAGAGGGGCTATCCAGCCACTGATTGACATGCTTAAGTCTCCAGATGCACAGCTTTGGGAAATGTCGGCTTTTGCACTTGGGAGATTGGCTCAGGACAATGTTGCGGATATTGTTAAGGTTGGTGGTGTTAAAAAACTACAGGATGGAGATTTCAAAGTTCAAGTGTTGGAACAACTGTTGTATCTTACGCGTTTTGGAGAAAAGGCTGTTAAAAAACGCGTGGCTCTGGCTCTTGCTCATTTATGTTCCCCCGATGATCGGAAATTTATTTTTGTTGACAACAATGGACTTGAGTTTTTGCTGGATCTTCTAGAATCTACAAACCTTAAACAGAAACGCGATGCTTCAACGGCACTTCACTCGGCTGTCAGAACTACATCTGTCTCTCTCTTTGATGCTGCTCCTCCATCCCCGACTCCCCAGGCAAACGGTTCTAATGCTCACCGAATTTGTATACTTGCTTCCTCTGATGCGTTTCGAGCAATGTTTAATGGTGGTTACCGGGAAAGGGAAGCCAAAGATGTAGAGATTCCTAACATTAAATGGGATGTCTTTGAGTTGATGATGAGGAACTATAGATTTTATTTGGATATTGCTCGGGATCTCCTAAGAGCTACTGATCAGTATCTTTTAGATGGTCTTAAGCGACATTAGGCATTCAATGCTATGTCATTGAGGCAAGCATGTATACTATTCTTGTTGGAGCAATTTGACAAACTGAGCGCCAAACCATGGTATTGCCGCTTGATGGGTTGCATTGTCCCAGATATATGTGAATTTTTCACACGTTTACTTATCAAGCCTACACGAGCAGAATCGTGA 1389 0.4298 MSSAIMSARDKRQEIVNSIVDSGAVPSLLKHLKAPEPVREATRASTQLIVDAGALPCLMDLLKRHKTCANSRALTGLIRRAADAITNLAHENSSIETRVRMEGGIPPLVEWLKFDDTKDKSEPRIYQHIIVGCNALPILVLMLGSEDAAIHSEANFNDRSCCTEGQREAALLFGQFAATDSDCKFHIAQRGAIQPLIDMLKSPDAQLWEMSAFALGRLAQDNVADIVKVGGVKKLQDGDFKVQVLEQLLYLTRFGEKAVKKRVALALAHLCSPDDRKFIFVDNNGLEFLLDLLESTNLKQKRDASTALHSAVRTTSVSLFDAAPPSPTPQANGSNAHRICILASSDAFRAMFNGGYREREAKDVEIPNIKWDVFELMMRNYRFYLDIARDLLRATDQYLLDGLKRHXAFNAMSLRQACILFLLEQFDKLSAKPWYCRLMGCIVPDICEFFTRLLIKPTRAES 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1544 462 SUPERFAMILY POZ domain 335 406 IPR011333 -
Lele07g1544 462 Pfam BTB/POZ domain 335 407 IPR000210 GO:0005515
Lele07g1544 462 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 53 103 IPR000225 GO:0005515
Lele07g1544 462 Gene3D - 2 120 IPR011989 -
Lele07g1544 462 SMART arm_5 180 220 IPR000225 GO:0005515
Lele07g1544 462 SMART arm_5 123 178 IPR000225 GO:0005515
Lele07g1544 462 SMART arm_5 42 90 IPR000225 GO:0005515
Lele07g1544 462 SMART arm_5 273 313 IPR000225 GO:0005515
Lele07g1544 462 SUPERFAMILY ARM repeat 12 151 IPR016024 -
Lele07g1544 462 SUPERFAMILY ARM repeat 79 313 IPR016024 -
Lele07g1544 462 Gene3D - 121 320 IPR011989 -
Lele07g1544 462 Gene3D Potassium Channel Kv1.1; Chain A 333 432 IPR011333 -
Lele07g1544 462 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 407 458 IPR044282 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1544 Lele-ChrLele07 9507526 9518556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1544 164 308 U-box Gene Family AT3G46510 29.932 6.74e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lele07g1544 BTB 3.4e-07 CL0033