Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1519 ATGGAAAGCACATGGGAAGCCCATTCTTCTAGTGATGTTTCTGTTTTACTCTCTGATTTGCCATTGCATCAACGCCAGCTCTGGGGCACCATATATACCACCTTTCCTTCCCTTGAAACTTCACTCCCAACAAAGAAATTGATAGCCCAGTGTCACCCCTGTCGCTCCCACATAATTCCAGGAAGCCTCGTTGCTTTACTTTCTCTTCATATTTTGAATTTTCAGTTCTTTCATTTCCTTCGAGGAGTTTTGCCCCAAAGTAAAGGTTGTGTTTCTGTTGTAAATGGCGCATTACAGTTAGTTTCCATTTTGTTTCTCGCCCCGGAAAGTCACAAGTGCACAAGAATACGTTTCAGTTTTCATCTGAAGAAAGCTAGGTTTGCAGATTGGTTGATAAAAAAGAGGTTGGAGTTATTCCAGTTCGCAATGGAGCAGTATGAAATTCTAGAACAGATTGGCAAAGGTTCCTTTGGTTCTGCTCTGCTTGTGAGGCACAAGCATGAAAGGAAAAAGTATGTCCTCAAGAAGATCCGCCTTGCCCGTCAAACTGATAGAACCCGTAGATCTGCCCACCAGGAGATGGAGCTTATCTCTAGAGTACGAAATCCCTTTATAGTTGAATATAAAGATTCCTGGGTAGAAAAGGGTTGTTTCGTGTGCATTGTCATAGGCTATTGTGAAGGTGGAGACATGGCAGAAGCTATTAAGAAAGCTAGTGGTGTTCATTTTCCGGAAGAGAAACTTTGTAAGTGGCTTGTTCAACTCTTGATGGCACTTGATTACTTGCATGCAAAACATATCCTTCATCGTGATGTCAAGTGTTCTAATATATTCTTGACAAAAGATCAAGACATACGACTAGGTGATTTTGGTCTGGCTAAATTACTGACATCTGATGATCTCGCTTCCTCTGTTGTTGGGACTCCGAGTTACATGTGTCCTGAGCTTCTTGCTGATATTCCCTATGGTTCAAAGTCAGATATCTGGTCTTTGGGCTGCTGTGTATATGAAATGTCTGCCCACAAGCCAGCTTTTAAAGCTTTTGATATGCAAGCATTAATTAACAAAATAAACAAGTCAATTGTGGCTCCACTGCCAACCATGTATTCTGGCGCTTTTCGAGGGCTTGTCAAAAGCATGCTGCGGAAAAATCCAGAGCTTAGACCAAGCGCTTCAGAGTTGCTAAATCATCCGCATCTTCAGCCCTACATTCTTAAAATTCACCTAAAACTAAACAACCCCAGAAGAAGTACTTTTCCATTCCAGTGGCCTGAGTTAAGCTACGTAAGGAGAACTCGGTTTGTGGAGCCAGACTCTGTTTCTACCCTTTCTGATAGAGATAAACGCTTGTCATTTAGCAATGACAGGGCCTTGAATCCTAGTATTTCTGGAACTGAAAAAGATTCTCAGTGCTCTACTCAAAATGGTCATGGATTTTCTACTCGTTCAAGGGACAAACTCTACGAACTATCTGTTGGTTGCGTCCGTGAAGAATGCATAGCTAACAAGTCAAAAGCCACAAAGTTCTCTACTGTTGGCAGTAATACTCCAAGGTTGAGAACAGCTAAGGATTCTGTCACCCCGAGAAGGCAGACAACCCCATCAAAAATATTTCATGCTGGTTCAAAGCGTGATTCACTTCCGGTGACTCATACTCCAGCAGGAAATTCTTCTCCACCATCACGTAGGGCATCCCTTCCGCTGCCTACGAGAGTCATGACCACAAAAACCTCTTATAGAGCCAAAGTGGGCCTCCTCCGGAGCGTGGAGTCTCCAGATGTTTCTGTTAATGCTCCACGAATTGACAAGATTGCTGAATTCCCTCTTGCATCTTATGAAGAAGCTATCTTCGCTGCCCCCAGAAGGTCATCAACATCTGCCATGTGCTCTTCTGCTGTTTGCTCAATCACAAAGGACAAGTGCACTGTCCAGGTTGTGGACAAGGCCGGGGCAGCCCCTGCCAGTGTGGGTGATACTTGTCCTGAAGCTTCAGGTCCAGGATATGGAAGTGAATGCTCTGAGCATGTTACGGCTGATGTTTCAAGTCGTTCGTCTGCAGAGTCACAACAGCGTCGGTTTGACACCTCGTCTTACCAGCAACGCGCCGAGGCATTGGAGGGGTTGCTTGAGTTCAGTGCAAGACTCCTACAACAACAGAGGTTCGAAGAACTTGGAGTGCTGTTGAAGCCATTTGGACCTGAGAAGGTTTCTCCAAGAGAAACAGCTATTTGGTTGACGAAGAGTTTTAAAGAAACCGTGTTCTTCCTGCAACTGGAAGATCAAGCGGAGGGCAGAGAGAGATCAGAGATGGAAGAAACAGAGATACTAGAACTATACGAGCTTAGCTATTCGGACCTTGTTTTCTTATCTTCAACAAATGCTTCATCGACTTCACCTGAGGAGCTCGACAACATCGAGTCAATGGCGAAAACCGTAATGGAAACCCTAGGGCCAATGGGTCCAGGCCTCCTTGCAGTCACTGGTGTTCCCAGAGCGTCCGAACTGCGTAAGGAGTTTTTACCTCTTGCACGGGAGCTCGCGCTACTGGACCATGAAAGCCGTAAACGCATCCTTAAGGAACACAGCTTGGGTAGCGATGTTCCTTTAAAAAATCCAGATAGGAGCGTGTCCTCCTTTGCTATGCAACTGAAATATGCAAATGCCACAATATTAACTGAAAGCAAACCAAGTAGAGGAGCAGATGACGAATTACATTCTGATGATAATCATAAGGAGGTTGATCAGATGATGTCAGAATGTCACGATGTGAAATTTAAGAATATAGGGAGTATTTTCAAGGAGTTGGGATTTGGCATGATGGAGCTGGGGCTTCGCCTTGCTCAAATATGTGATAGGGCCATTGGGAGCAATGAGTTAGAGCAGAGCCTCTTAGAATCATGTGCAGCAAAGGGGCGTCTTATACATTATCACTCGGTTCTAGATGGACTGCTTCTTAAAGAACTTGACAGGCGCAAGAGAACCGGCAAGAGTGAGCCTAATATCAAAAGGGATCAGGAATACATAAATACAAAGGGCCAGAAACAATTAAAAGGTTCGGAGTTAAATTCAAGTGCCTGTGATGCTAATTCATGTGGGATTCATTCTAATTTGTGGCAGCAATGGCATTATGATTATGGTATATTCACTGTTCTGACAGCTCCCTTCTTTCTTATGCCATCTTATTCGCTGACAACCAAAACAGAAGAGCCGTTTTCTGCATCTTGTTATGAAGAATTTCCTTCGCCAATTGGGCATACATCTTTGCAGATATATGATCCAAACAAGAATAAGGTGTTTATGGTAAAGGCTCCACCAGAGAGTTTTATAATTCAAGTTGGGGAATCTGCTGATATCATTTCAAAAGGAAAGCTTCGCTCAACCTTGCATTCCGTATATAGACCTGCAAACTTCGAAAATTTAAGCAGAGAAACTTTTGTTGTATTTCTGCAGCCTTCGTGGAATAAAACATTCTCAAGCACAGACTATCCTCAGACTAACACGACGTCTAATGCTAGGTGTTTAATGGCATCTGATGATGAACAACAGTTTGGGCAGGATAAAAGTAAACTATGTGACGAAATTCAGAGAATAGTTCCACCACTTTCTTCAAGGTTGAAGCATGGGATGACTTTTGCTGAGTTCTCAAGAGAAACAACAAAGCAGTATTATGGGGGTAGCGGTTTGCAATCTAACAGATAG 3699 0.4353 MESTWEAHSSSDVSVLLSDLPLHQRQLWGTIYTTFPSLETSLPTKKLIAQCHPCRSHIIPGSLVALLSLHILNFQFFHFLRGVLPQSKGCVSVVNGALQLVSILFLAPESHKCTRIRFSFHLKKARFADWLIKKRLELFQFAMEQYEILEQIGKGSFGSALLVRHKHERKKYVLKKIRLARQTDRTRRSAHQEMELISRVRNPFIVEYKDSWVEKGCFVCIVIGYCEGGDMAEAIKKASGVHFPEEKLCKWLVQLLMALDYLHAKHILHRDVKCSNIFLTKDQDIRLGDFGLAKLLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMSAHKPAFKAFDMQALINKINKSIVAPLPTMYSGAFRGLVKSMLRKNPELRPSASELLNHPHLQPYILKIHLKLNNPRRSTFPFQWPELSYVRRTRFVEPDSVSTLSDRDKRLSFSNDRALNPSISGTEKDSQCSTQNGHGFSTRSRDKLYELSVGCVREECIANKSKATKFSTVGSNTPRLRTAKDSVTPRRQTTPSKIFHAGSKRDSLPVTHTPAGNSSPPSRRASLPLPTRVMTTKTSYRAKVGLLRSVESPDVSVNAPRIDKIAEFPLASYEEAIFAAPRRSSTSAMCSSAVCSITKDKCTVQVVDKAGAAPASVGDTCPEASGPGYGSECSEHVTADVSSRSSAESQQRRFDTSSYQQRAEALEGLLEFSARLLQQQRFEELGVLLKPFGPEKVSPRETAIWLTKSFKETVFFLQLEDQAEGRERSEMEETEILELYELSYSDLVFLSSTNASSTSPEELDNIESMAKTVMETLGPMGPGLLAVTGVPRASELRKEFLPLARELALLDHESRKRILKEHSLGSDVPLKNPDRSVSSFAMQLKYANATILTESKPSRGADDELHSDDNHKEVDQMMSECHDVKFKNIGSIFKELGFGMMELGLRLAQICDRAIGSNELEQSLLESCAAKGRLIHYHSVLDGLLLKELDRRKRTGKSEPNIKRDQEYINTKGQKQLKGSELNSSACDANSCGIHSNLWQQWHYDYGIFTVLTAPFFLMPSYSLTTKTEEPFSASCYEEFPSPIGHTSLQIYDPNKNKVFMVKAPPESFIIQVGESADIISKGKLRSTLHSVYRPANFENLSRETFVVFLQPSWNKTFSSTDYPQTNTTSNARCLMASDDEQQFGQDKSKLCDEIQRIVPPLSSRLKHGMTFAEFSRETTKQYYGGSGLQSNR 1232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1519 1232 FunFam Serine/threonine-protein kinase Nek2 143 225 - -
Lele07g1519 1232 SUPERFAMILY Clavaminate synthase-like 820 1225 - -
Lele07g1519 1232 MobiDBLite consensus disorder prediction 510 539 - -
Lele07g1519 1232 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 143 710 - -
Lele07g1519 1232 MobiDBLite consensus disorder prediction 454 480 - -
Lele07g1519 1232 FunFam Serine/threonine-protein kinase Nek3 228 474 - -
Lele07g1519 1232 ProSitePatterns Serine/Threonine protein kinases active-site signature. 267 279 IPR008271 GO:0004672|GO:0006468
Lele07g1519 1232 CDD STKc_Nek 145 400 - -
Lele07g1519 1232 Gene3D - 796 1174 IPR027443 -
Lele07g1519 1232 Gene3D Transferase(Phosphotransferase) domain 1 226 413 - -
Lele07g1519 1232 ProSiteProfiles Protein kinase domain profile. 146 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele07g1519 1232 SUPERFAMILY Protein kinase-like (PK-like) 142 457 IPR011009 -
Lele07g1519 1232 Gene3D Phosphorylase Kinase; domain 1 125 225 - -
Lele07g1519 1232 MobiDBLite consensus disorder prediction 452 480 - -
Lele07g1519 1232 MobiDBLite consensus disorder prediction 549 566 - -
Lele07g1519 1232 MobiDBLite consensus disorder prediction 510 566 - -
Lele07g1519 1232 SMART serkin_6 146 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele07g1519 1232 Pfam Protein kinase domain 146 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele07g1519 1232 ProSitePatterns Protein kinases ATP-binding region signature. 152 175 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1519 Lele-ChrLele07 9336292 9344942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1519 152 401 MAP Kinase Kinase Kinase AT1G53570 31.373 6.13e-36 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Lele07g1519 Pkinase 2.7e-63 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g1519 07 9336292 9344942 Lele07g1519 07 9336292 9344942 ECH
Lele05g1455 05 9336898 9345421 Lele07g1519 07 9336292 9344942 hybridization
Lele06g1312 06 8401124 8405766 Lele07g1519 07 9336292 9344942 hybridization