Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1505 ATGTCCAATTCTACTACTTCTTTGTCCGTAGAATCCTCTGTCTCTTCCGCTACTAGACTTCATGACCTCTCTGGAGTAGTAAATCCCCTACTCCCCACAATTCTTCCTCAGCAGCCTCTAAAGATCAAGAAAAAGAGAAGCCTCCCCGGAAACCCAGACCCGGATGCAGAAGTGATAGCGTTATCTCCGAAGACTCTTTTGGCGACCAATAGGTTTGTGTGTGAGATCTGCAACAAGGGTTTCCAGAGAGACCAGAATCTTCAACTTCATAGGAGAGGCCATAACCTGCCATGGAAGCTGAAGCAAAGGAACAACAAAGAGGTGAAAAAGAGAGCCTACGTTTGCCCCGAGCCTACATGCGTTCATCACAACCCCTCGAGGGCTCTGGGGGATCTCACTGGAATTAAGAAACACTACTGCAGAAAACATGGAGAGAAAAAGTGGAAATGCGAGAAATGCTCAAAGATCTACGCTGTTCAGTCAGATTGGAAAGCACACTCTAAAACCTGTGGAACTAGAGAATATAGATGTGATTGTGGAACTCTCTTCTCCAGGAAGGACAGCTTCATAACTCATAGAGCATTCTGTGATGCATTGGCAGAAGAAAGTGCAAGACTCTCAGCAAATCAAGTAGCCTCCACTACCAACACGAACCCACTGGTTCAATCTCTCTTACTATATCCCACCCAACACAGCTTCCTCAATAATCCATGGCACCCATCTCCAGAAAACCCTAATCCCAGCAACGTTCTCCAAGTCAAGCCCGAAGCTCAGCATTTTCAGATGCGTCATTCGTATCTTCAGGAACCTCCTCATCATCCTCCTCACCACAAGAGCGCTCTGATAAACACACCCTTTCGGAGCCCAAACATGTTGTCCATGCAATCTTCCTCAAACGCTGCCACGTCAGGCCACCTTTCTGCTACTGCTCTCCTTCAAAAGGCTGCCACCGTCGGGGCCACCCCAATCACGCCCCAACGACCATCTCAGTCTCAGACTCATCAGCTTAGCATGAGCGAGTTCGGAGCAGTGAATCAGCTCGACTCGGTGGTGCCTGACTATGTGAGGGGGTTCGCGACTAGGAATCTTAAGAATGAGCATCTGACAAGGGACTTCATGGGTCTCACTGACGATGGCAACAACGGAGGCGACGGTGAGAACGGCGGGGCGGTCAACCTGAAGAATGTCATGACGTTCACGGGGGATTTGTACGAGCACCACCATCACCACTCACTCTTCAAGTCCCGACAAGGTTTCGGATTCGTTGGGACTTCCAATGCCCCCGAGACGTGGAGCAATTATTGA 1305 0.4943 MSNSTTSLSVESSVSSATRLHDLSGVVNPLLPTILPQQPLKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVKKRAYVCPEPTCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQVASTTNTNPLVQSLLLYPTQHSFLNNPWHPSPENPNPSNVLQVKPEAQHFQMRHSYLQEPPHHPPHHKSALINTPFRSPNMLSMQSSSNAATSGHLSATALLQKAATVGATPITPQRPSQSQTHQLSMSEFGAVNQLDSVVPDYVRGFATRNLKNEHLTRDFMGLTDDGNNGGDGENGGAVNLKNVMTFTGDLYEHHHHHSLFKSRQGFGFVGTSNAPETWSNY 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1505 434 MobiDBLite consensus disorder prediction 283 300 - -
Lele07g1505 434 Gene3D Classic Zinc Finger 141 205 - -
Lele07g1505 434 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Lele07g1505 434 SMART c2h2final6 113 143 IPR013087 -
Lele07g1505 434 SMART c2h2final6 72 94 IPR013087 -
Lele07g1505 434 SMART c2h2final6 148 168 IPR013087 -
Lele07g1505 434 FunFam protein indeterminate-domain 12-like 51 119 - -
Lele07g1505 434 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 94 IPR013087 -
Lele07g1505 434 SUPERFAMILY beta-beta-alpha zinc fingers 71 168 IPR036236 -
Lele07g1505 434 Gene3D Classic Zinc Finger 52 121 - -
Lele07g1505 434 MobiDBLite consensus disorder prediction 267 300 - -
Lele07g1505 434 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 389 IPR031140 -
Lele07g1505 434 FunFam protein indeterminate-domain 5, chloroplastic-like 126 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1505 Lele-ChrLele07 9219796 9222762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1505 6 423 IDZ Gene Family AT4G02670 48.730 2.38e-123 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele07g1505 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1440 05 9207193 9210527 Lele07g1505 07 9219796 9222762 hybridization
Lele06g1303 06 8344590 8347619 Lele07g1505 07 9219796 9222762 hybridization