Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1491 ATGCTGCAGCTCAACTCCAGCGACGGCACCGACCACCTTGGCGCTGGCGGTGGTAGTGGTGCCTTTCATGCACCGGTCTATCAGCTAGGCCTGAGCTTGGAGCAAGGGAAAGGAGGTTTTCTGAGGCCCGAGGAGGCTTCTGGAAGTGGGAAGCGATTTCGCGAAGACATCGTTGATAATAGAGCGAAGAATGTTTTTCATGGTCAACCCTTGCCTACTACCATTCTCGCAGCTCCACATCCACCAGCAATGCGTCCAAGAGTCCGAGCTAGAAGAGGACAAGCTACAGATCCACACAGTATAGCTGAACGGTTGCGCAGAGAAAGAATAGCAGAAAGAATCAGGGCTTTGCAGGAACTTGTTCCTAGTGTCAATAAGACAGATAGAGCTGCCATGCTAGATGAAATTGTGGATTATGTCAAATTCTTGAGGCTTCAAGTTAAGGTTTTGAGCATGAGTAGGCTGGGCGGAGCTGGTGCAGTGGCACCACTGGTAACTGACATTCCATTATCATCAGTTGAGGAAGAAGGAAGTGAAGGTGGAAGAAATCAACCAGCTTGGGAGAAATGGTCAAACGATGGCACAGAAACACATGTGGCTAAGCTCATGGAAGAAAATGTCGGGGCTGCCATGCAGTTCCTTCAATCAAAGGCTCTTTGCATCATGCCCATCTCTCTGGCATCAGCGATATACCAGTCACAGCCACCGGACACCTCCAGTATAGTGAAGCCAGAAACTAACCCTCCTTCATAG 753 0.4967 MLQLNSSDGTDHLGAGGGSGAFHAPVYQLGLSLEQGKGGFLRPEEASGSGKRFREDIVDNRAKNVFHGQPLPTTILAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSEGGRNQPAWEKWSNDGTETHVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPPDTSSIVKPETNPPS 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1491 250 SMART finulus 100 149 IPR011598 GO:0046983
Lele07g1491 250 Pfam Helix-loop-helix DNA-binding domain 99 143 IPR011598 GO:0046983
Lele07g1491 250 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 92 153 IPR036638 GO:0046983
Lele07g1491 250 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 94 143 IPR011598 GO:0046983
Lele07g1491 250 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 67 229 - -
Lele07g1491 250 Gene3D - 89 151 IPR036638 GO:0046983
Lele07g1491 250 FunFam Basic helix-loop-helix transcription factor 89 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1491 Lele-ChrLele07 9099913 9103549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1491 22 249 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 80.426 3.45e-120 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele07g1491 HLH 8.3e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1427 05 9066363 9069538 Lele07g1491 07 9099913 9103549 hybridization
Lele06g1290 06 8217617 8221267 Lele07g1491 07 9099913 9103549 hybridization