Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1489 ATGGGTATCAGTTTTGACGATGAGCTCATGAATCTGAAGGACACAGAGCTAAGGTTGGGATTGCCCGGAAGGGACGAGGAAGAAGATAAACGTTCATGCAGCGCCAGGAGCAACAAGAGGTGTTGGCGCCAATCAAGTGAGGACGAGGAATCCTCAGAAACCCAGAACAACGCCTGTAATAACAGTTCTGATGATCAAGATAACTCCCCACCAGCAAAGGTACAAGTAGTGGGATGGCCACCGATTCGATCTTACAGGAAGAATTGTGTTCAACAACAAAAGAAGGGATCTCAAGAGAGTGATGGGGCTGGAAATATGTATGTGAAAGTGAGCATGGACGGTGCTGCTTATCTGAGGAAGATAGATCTCAAGGTTTACAACAGCTACACACAGCTCCTCAAGGCCTTGCAGAACATGTTCAAGTGCACTTTTGGTGAGTACTCAGAAAGGGAAGGCTACAATGGATCTGAATACGCCCCTACTTATGAAGACAAGGATGGCGACTGGATGCTGGTTGGAGATGTTCCATGGAATATGTTCATGTCATCTTGCAAGAGGCTGAGAATCATGAAAGGATCGGAGGCTAAGGGATTGGGTGGTAGTTTATGA 609 0.4663 MGISFDDELMNLKDTELRLGLPGRDEEEDKRSCSARSNKRCWRQSSEDEESSETQNNACNNSSDDQDNSPPAKVQVVGWPPIRSYRKNCVQQQKKGSQESDGAGNMYVKVSMDGAAYLRKIDLKVYNSYTQLLKALQNMFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFMSSCKRLRIMKGSEAKGLGGSL 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1489 202 Pfam AUX/IAA family 38 199 IPR033389 -
Lele07g1489 202 Gene3D - 100 201 - -
Lele07g1489 202 ProSiteProfiles PB1 domain profile. 105 192 IPR000270 GO:0005515
Lele07g1489 202 MobiDBLite consensus disorder prediction 19 50 - -
Lele07g1489 202 SUPERFAMILY CAD & PB1 domains 98 191 - -
Lele07g1489 202 MobiDBLite consensus disorder prediction 19 77 - -
Lele07g1489 202 FunFam Auxin-responsive protein 100 202 - -
Lele07g1489 202 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 196 IPR003311 GO:0005634|GO:0006355
Lele07g1489 202 MobiDBLite consensus disorder prediction 51 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1489 Lele-ChrLele07 9090477 9091313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1489 108 198 B3 DNA Binding Superfamily AT2G46530 39.560 1.59e-12 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele07g1489 AUX_IAA 2.6e-61 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1969 13 27165077 27167494 Lele07g1489 07 9090477 9091313 CCT
Lele15g0440 15 2551279 2553657 Lele07g1489 07 9090477 9091313 CCT
Lele16g0464 16 2526832 2529326 Lele07g1489 07 9090477 9091313 CCT
Lele05g1425 05 9057310 9058148 Lele07g1489 07 9090477 9091313 hybridization
Lele06g1288 06 8208079 8208925 Lele07g1489 07 9090477 9091313 hybridization