Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1481 ATGGCGAATCAGGTAGTCAAAGTGAAGAGGGAAACGATTGCAGCATGCATGACCTGCCCACTCTGCAACGAGTTGTACAAGGAGGCCACCACTATATCTGAATGCCTGCATACGTTTTGCAGGAAGTGCATATATGACAAAATTACAGATGAGGAATTGGAATGCTGTCCAATCTGCAATATTGATTTAGGCTGTGCTCCGCTGGAGAAATTGAGGCCAGACCACAGTTTGCAAGATGTAAGGGCTAAAATTTTCCCTTTGAAGCAAACAAAGGAAAAGGAACCAGAAGTTGTCCCTCCAGAACCATTACCAGCTAGAAGAAAGGAAAGATCACTTTCATCTTTGGTTGTCAGCACTCCCAGAGTATCATCAGCACAGGCAACCATGACAGGAAGAAGAACAAAGCCTACAAGAAAGGCTAGTGCTCGCTCCACTAGTTTTTCCGTTGGAAAAACCATTATAAAAGAGGAAGATTCAGTGGAAGATCATCCAGAGAGTTCGAGCTCACCCGATACATCCAACAAGGTTTCTCAGACTACTAGACAGAACTCGTCCCCTCATGATGCAAGCCAATCTGTTCCCAATAAGGAGAAAAATAATGGGGCTGAACCTTGGGAAGCAAAGGATCTTTGGAAACCTTTGAATTGTTTGGTGGAGATTGCAAGTAGGAGTAAATCTTTCAAGTCCAACATACAAGGATGTGATGCTAAACAAGAACCTACTCAAATAAATGAGAATGATTCTCAAGTACAAAAGCCCAAAATTAAGGACAACAGGCGAAAGTCAAAAGTTGAGGATGAAAAGATCGTCACTGATTCTGCTTCTCCAGATACAGAAAAGGCAAATAAATCGCGCAGAAATCGCCGAAAGAAGGAACCTGTTGTGGGTGAATCAAGCATATCACCCCAAGCTGTGCTGGATGCAAACAGTGCTAAAATGAAAGAAAGAACTGGTCCAATATGGTTCTCCTTAGTAGCCTCTGAAGACCAGGACAAAGATGCACCACTACCACAAATTTCTGCAAATTACTTAAGAATAAAGGATGGAAACATGCCAGTCTCATTTATCCAGAAGTACCTGATGAAGAAATTAGATCTGGCCAGTGAAGATGAGGTTGAGATTAAATGCATGGGACAACCAGTGGTCCCTACACTGCAACTGAATAACTTGGTTGACTTGTGGCTGCAAACAACATCGCCATCACAGAGAATCCCAGTAGCCATTGGATCATCAGCAAAAGATTTTGTTATGGTTCTGACGTATGCTCGCAAGCAGGCCCCGCCGCCTTGA 1290 0.4326 MANQVVKVKRETIAACMTCPLCNELYKEATTISECLHTFCRKCIYDKITDEELECCPICNIDLGCAPLEKLRPDHSLQDVRAKIFPLKQTKEKEPEVVPPEPLPARRKERSLSSLVVSTPRVSSAQATMTGRRTKPTRKASARSTSFSVGKTIIKEEDSVEDHPESSSSPDTSNKVSQTTRQNSSPHDASQSVPNKEKNNGAEPWEAKDLWKPLNCLVEIASRSKSFKSNIQGCDAKQEPTQINENDSQVQKPKIKDNRRKSKVEDEKIVTDSASPDTEKANKSRRNRRKKEPVVGESSISPQAVLDANSAKMKERTGPIWFSLVASEDQDKDAPLPQISANYLRIKDGNMPVSFIQKYLMKKLDLASEDEVEIKCMGQPVVPTLQLNNLVDLWLQTTSPSQRIPVAIGSSAKDFVMVLTYARKQAPPP 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1481 429 MobiDBLite consensus disorder prediction 166 198 - -
Lele07g1481 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 101 IPR013083 -
Lele07g1481 429 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Lele07g1481 429 SMART ring_2 19 59 IPR001841 -
Lele07g1481 429 MobiDBLite consensus disorder prediction 88 206 - -
Lele07g1481 429 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 427 IPR044807 GO:0004842
Lele07g1481 429 MobiDBLite consensus disorder prediction 88 108 - -
Lele07g1481 429 MobiDBLite consensus disorder prediction 250 283 - -
Lele07g1481 429 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Lele07g1481 429 MobiDBLite consensus disorder prediction 112 152 - -
Lele07g1481 429 SUPERFAMILY RING/U-box 14 83 - -
Lele07g1481 429 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Lele07g1481 429 MobiDBLite consensus disorder prediction 236 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1481 Lele-ChrLele07 9032793 9037476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1481 2 347 C3H Transcription Factor Family AT2G30580 52.000 8.74e-109 322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g1481 07 9032793 9037476 Lele13g1951 13 27052421 27055365 CCT
Lele07g1481 07 9032793 9037476 Lele14g1880 14 25379206 25379787 CCT
Lele07g1481 07 9032793 9037476 Lele15g0459 15 2660548 2663386 CCT
Lele07g1481 07 9032793 9037476 Lele16g0481 16 2636521 2637102 CCT