Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1449 ATGGATTCAGATTCCTTTTTCTGGCAATACCCCCAACCTGACTGCTCCCCTCTAGATTCCTTTGTTTCTGATGCAGTATCTTTCTCCTCCTGGGACGATGACCTCTGGCTCTTCAACCACGACTACAACAACTACTACTTCCCTCAACATCATGCCTTGTCTTCCGATGTTACGGCCAAGGATTCGTCGTCTTCCGACTCCAATTCTTCAGCCCTGGAGGCCGCAGTGCAACAAGAAGTCTCTTCCGGTTTCACCTGCCCCGAAGTTGAGGTCAGGGAAGAAGCGTCGCCTCCGCCGGCCCTGGCCGCGGCAGACGATCAGAAGAGGGTGTACAGGGGAGTGAGGAGGCGGCCGTGGGGGAAATACGCGGCGGAGATAAGGGACTCCACCAGAAAAGGGGTGAGAGTGTGGATCGGAACATTTGACTCGGCGGAGGAAGCCGCTTTGGCGTATGATCAGGCGGCATTGTCCACGAGGGGATCACAGGCGATACTCAATTTCCCGGAGGAAGTGGTGAGAGAGTCGCTGAGGAAGATGCCGTACAAGACATGGCAAGAAGCTTGCTCTCCGGTGTTAGCCCTCAAGAAGAAACACAACATCAAACGAAAGTCCAAGAAGTCAAGAACTCCTCCTCCTCCTCCTCCGGCCAAAACCCAGATCGATTCTACTCATAAGGGTGTGTTGGTTCTGGAGGATTTGGGAGCCGAATATCTGGATCAGCTTCTGGCCCTCACAACTCAATATTGA 747 0.5355 MDSDSFFWQYPQPDCSPLDSFVSDAVSFSSWDDDLWLFNHDYNNYYFPQHHALSSDVTAKDSSSSDSNSSALEAAVQQEVSSGFTCPEVEVREEASPPPALAAADDQKRVYRGVRRRPWGKYAAEIRDSTRKGVRVWIGTFDSAEEAALAYDQAALSTRGSQAILNFPEEVVRESLRKMPYKTWQEACSPVLALKKKHNIKRKSKKSRTPPPPPPAKTQIDSTHKGVLVLEDLGAEYLDQLLALTTQY 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1449 248 Pfam AP2 domain 110 160 IPR001471 GO:0003700|GO:0006355
Lele07g1449 248 SMART rav1_2 110 174 IPR001471 GO:0003700|GO:0006355
Lele07g1449 248 ProSiteProfiles AP2/ERF domain profile. 110 168 IPR001471 GO:0003700|GO:0006355
Lele07g1449 248 MobiDBLite consensus disorder prediction 199 223 - -
Lele07g1449 248 Gene3D AP2/ERF domain 110 170 IPR036955 GO:0003700|GO:0006355
Lele07g1449 248 CDD AP2 111 169 IPR001471 GO:0003700|GO:0006355
Lele07g1449 248 FunFam Ethylene-responsive transcription factor 2 109 169 - -
Lele07g1449 248 PRINTS Ethylene responsive element binding protein signature 134 150 IPR001471 GO:0003700|GO:0006355
Lele07g1449 248 PRINTS Ethylene responsive element binding protein signature 111 122 IPR001471 GO:0003700|GO:0006355
Lele07g1449 248 PANTHER DNA-BINDING DOMAIN 69 242 IPR044808 GO:0003700|GO:0009873
Lele07g1449 248 SUPERFAMILY DNA-binding domain 110 169 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1449 Lele-ChrLele07 8779811 8780557 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1449 98 243 AP2-EREBP Transcription Factor Family AT3G23240 53.741 3.39e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele07g1449 AP2 1.7e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g1449 07 8779811 8780557 Lele07g1449 07 8779811 8780557 ECH
Lele05g1384 05 8723775 8724512 Lele07g1449 07 8779811 8780557 hybridization
Lele06g1248 06 7926072 7926680 Lele07g1449 07 8779811 8780557 hybridization