Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1430 ATGAGTGGAGTTAGACGCCATACCTTTGGTACAGATTATGAAGACCCCATTATCACCAAACTACAAGATCATCTGTTACCTAGTTTTTTTCTGGCTGTGGTTTCTGTTAGCACTCCCCCTTGTCTAAATGACACTTCTGCATATAAGGCAATTCTTAAGCATCGTCCATGGATAGTTTTTCACCAAAGTGACCATGACCTTGAGAAATCCAACACAGAGCATTTTCCTCAGGGTTTGTCTTCAAATGCTTGTCGTCCAGAAGGGGTTACTCTTGGTTGTCCAGACTGTAGTGATTGTCTGAAGGTAACTGCAAGTTGGTGCCCTGAGGATGCAAGAAGAGATGTCCCTGATGAAGCTCAAATTTTCCGCCCAACAGAAGAGGAATTTCAAGACACACTTGAATATATTGCAAGCATACGTTCCAAAGCAGAGCCTTATGGAATTTGTCGTATTGTTCTTCCTCCTACCTGGCAACCGCTATGTCTTCCTGAGGAAAAAAAACATACGGGAAAACTCCAAATTTGTTACTCAGATCAGCAGGTTGATGGACTTCAAGTTCAGTGCCAGCAAGAAGTTGTGGACGACTCTTCCAAAAATGCAGAGACCAAGACCAGAAGAGGTCTAAGAGTAGCTTTGGACTCTCAATCTGGTAATGAAAACCCCCATGATGTTGAAGATTCTGAGTCTAAACCTGGCCCTACCTTCAGTCTCAGTACATTTAAGAAATTTGCTGATGATTTCAAGGCCAAGTACTTCAACTGTGACAATAATGTTGTTGGGGGTTCTGGTGAAAAGTGGGAGCCGTCTGTGGAAAATATTGAGGGTGAGTATGGACGGATTATTCAAAATCCAACTCACAAAATTGAGGTGTTTTTCTGTAACAACTTGGGGGCTGGAGTTTTAAGCAGTGGATTTCCAATGGTGTCTGATCCTCTGGAGTCACTTAAATATCCTGAATGTATGAAATCTGGATGGAACTTAAATAACATGCTTACACAATCTGGTTCTCTTCTTTCATTTGAAAGCTCTGAGGTTTCTAGCAAATTTACCCCTCAGAAAGTAGAAGAGCACCAGTTGTACAAATTGTGTTACATGCATGTGGGTGAGCCTAGAGTTTGGTATAGCATTCCCGGAAGATTTGCTGCTGACTTTGAAAGAGTGAGCAAGAAGCATCTCCCTGTTTTGTCTGCAGAACAGTCTGACTTGTGTGACAATCTGTTATCCTCCACCGAATTGAAGTCTGAGGGTATAGCGGTATATCGCTGAGCATACCATTCTGGATTTGATTGTGGTTTCAATTGTTCTGAATCATTCAGTTTTGCTCCTCTTGATTGGCTGCTTCATGGACAGAAAGTTGTAGAGTTATATTGTGAACAAAGGAGAAAGACTTCAATCTCATACGATAAGCTGTTGCTTGGGGCGGCAAGGAAAGCTGTTAGGGCACAATTTGAGATTGAACTCTGCGGGAGGCTCTGTCGTTGCCCTTGGAGTGACAGATTTATCCTCTGCCGATATGAAATCAGTGTTGGATACCCTTTCTCTTGCTTTGGGGGGAAAAGTAAGTGTTATCCACAAATGGGCCAATCCGATCTTGGATTAACTTTAACCTCCGTTGCCTCCAAAAGAAATGTGAGGGGTTCATGGGCTACTCCCTTGGCAAGAGAAGCATTTTTGAATTCACTGAAACGGAAAAGGGATGCAGTAGAGTCCGAAGATATGAGCACTGATGGTATCTTTTCCAGCATCGAGGCAGAACTGAAGGCACATTTATCTGAATCAACATGTGTTGGTAAATCGAAGGCGAAACAGTTGGAAAGAGAAGCATTTTTTAATTCACTGAAACGGAAAAGAGATGCAGTTGAGTCCGAAGGGATGAGCACGATCACTGATGGTATCTCTTCCAGCAACGAGGCAAAATCGAAGGCACCTATACCTGAATCAACATGTGCAGGTAAATGGAAGGCAAAACAGAAAACGGTAGGCCACCGATCTACAGCAACACAAATTAAGAGTGGGGTCAATTCTGCTGTGGCCACTAAACCTGATCCGAAGTCACCCAATGTTCAGTCATCAATTCCAGATTTGGCTAAAAATGACCCAAAAAAGGCTAGGGATTTTCTAGGTCTCAGTCTAACTTCAGGTTCTATGGCACTGCTGCCTGAACTCAGGTCATTAGATGTTCCTTCAGGTAGTTCATCTTCGTCATCAGAATCCGATGATGACGCTCAAGTAGCTGATAGTAAGAAAAATTAA 2253 0.4279 MSGVRRHTFGTDYEDPIITKLQDHLLPSFFLAVVSVSTPPCLNDTSAYKAILKHRPWIVFHQSDHDLEKSNTEHFPQGLSSNACRPEGVTLGCPDCSDCLKVTASWCPEDARRDVPDEAQIFRPTEEEFQDTLEYIASIRSKAEPYGICRIVLPPTWQPLCLPEEKKHTGKLQICYSDQQVDGLQVQCQQEVVDDSSKNAETKTRRGLRVALDSQSGNENPHDVEDSESKPGPTFSLSTFKKFADDFKAKYFNCDNNVVGGSGEKWEPSVENIEGEYGRIIQNPTHKIEVFFCNNLGAGVLSSGFPMVSDPLESLKYPECMKSGWNLNNMLTQSGSLLSFESSEVSSKFTPQKVEEHQLYKLCYMHVGEPRVWYSIPGRFAADFERVSKKHLPVLSAEQSDLCDNLLSSTELKSEGIAVYRXAYHSGFDCGFNCSESFSFAPLDWLLHGQKVVELYCEQRRKTSISYDKLLLGAARKAVRAQFEIELCGRLCRCPWSDRFILCRYEISVGYPFSCFGGKSKCYPQMGQSDLGLTLTSVASKRNVRGSWATPLAREAFLNSLKRKRDAVESEDMSTDGIFSSIEAELKAHLSESTCVGKSKAKQLEREAFFNSLKRKRDAVESEGMSTITDGISSSNEAKSKAPIPESTCAGKWKAKQKTVGHRSTATQIKSGVNSAVATKPDPKSPNVQSSIPDLAKNDPKKARDFLGLSLTSGSMALLPELRSLDVPSGSSSSSSESDDDAQVADSKKN 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1430 750 Pfam jmjN domain 121 152 IPR003349 -
Lele07g1430 750 SMART cupin_9 322 457 IPR003347 -
Lele07g1430 750 ProSiteProfiles JmjC domain profile. 306 457 IPR003347 -
Lele07g1430 750 ProSiteProfiles JmjN domain profile. 119 160 IPR003349 -
Lele07g1430 750 Gene3D Cupin 114 463 - -
Lele07g1430 750 MobiDBLite consensus disorder prediction 726 740 - -
Lele07g1430 750 MobiDBLite consensus disorder prediction 720 750 - -
Lele07g1430 750 MobiDBLite consensus disorder prediction 627 642 - -
Lele07g1430 750 MobiDBLite consensus disorder prediction 197 232 - -
Lele07g1430 750 Pfam JmjC domain, hydroxylase 350 440 IPR003347 -
Lele07g1430 750 SUPERFAMILY Clavaminate synthase-like 363 479 - -
Lele07g1430 750 SMART JmjN_1 118 159 IPR003349 -
Lele07g1430 750 PANTHER LYSINE-SPECIFIC DEMETHYLASE 114 658 - -
Lele07g1430 750 MobiDBLite consensus disorder prediction 627 702 - -
Lele07g1430 750 MobiDBLite consensus disorder prediction 660 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1430 Lele-ChrLele07 8670906 8676588 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1430 56 487 JUMONJI Transcription Factor Family AT1G08620 40.748 4.18e-95 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lele07g1430 JmjC 8e-09 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g1430 07 8670906 8676588 Lele07g1430 07 8670906 8676588 ECH
Lele07g1430 07 8670906 8676588 Lele08g1225 08 7740044 7747156 ECH
Lele05g1368 05 8600989 8610001 Lele07g1430 07 8670906 8676588 hybridization
Lele06g1229 06 7778793 7785869 Lele07g1430 07 8670906 8676588 hybridization