Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1403 ATGGAGGACTCTGGGAAGCATGGCAACAACAGTAAATTCTTGAACCCATGGATGCTTCAGTTCCAGAAATTGGGTCTTGAACTCAAGTGCCCTCTCTGTTTAAACTTGTTCAGAAGGCCGATGTTACTTCCATGCAACCACATATTCTGCAGCTCCTGCATAGCTGATTGCATAAGGCCTAGTTCAGAATGTGCTGTTTGTAATATTCATTATGCTCAAAGAGATCTGAGGTCTCTGCCTATTGTGGAAAACATGGTTGCAATTTATAAAAGCCTGGATTCTGCCTTTTATGCCAATCTATCTCAGCATCGTTCTTCTGATGGGCTGCCATTTTTGGAGCGGTGTGAAGCATTGTCAAATGTGACTTTTAATCATAAAATGTCCATGGAGCCATCCAAAACATCTCTAGCAGATCTACAAAGGGAGCAGTCAGTCCTTTCACAAGCAATGGTTGAACGTGTTAAGGTTCCTCTCAGTTTTGACCATTCTATGGAAATTGATATTGGCAAGAATCACAAATATGAGAAGAGTGGTAATGTGGTGCATGGTAAAGATAAGGAGTTTGATGTTTCTTGCAAGGAAGAGATTCTGATGAAATGTTCTCAACTAGATGGAAGGGCCCATGAAGATTGTGGGCTTGTGGAAATGGACATAAATCAAGTTACACAATCTTCACTGGGCAGCCCTCCATTTTGTGATACAAAGGGTTCAGACAATGACTGCAGTGACCAGGACAGTGAACATCGCATGCCTGCTGAGAGATTGGAAAGTTCTTCATCAAAGAGGGAAATCAAAGAAAATGAAATATTGGAAAAAAGGATCCAGTTGAGGTCTGAAAGCTCTGCCTCTGAAACAGAGGGTCTTGTGAGAGACTCCAAGAGGCCAAAAAATGTTTCTCATGACAATGATGACATTCAACCTAATGGAACCCGTCAAAGTAAGCCCATGATGTCTGAATGTAACATGGACCTTAAATTTGGGATTGACCTGGATTCAAGTTCAAATACAAGCGTGTGTTCTTTTTGCCAGTCTTCTAGAACTTCAGAGGTTACTGGGCCGATGTTGCATTATAAAAATGGGAATTTGGTGACGGGAATTGCAGCACTCCAACCAAATGTCATACATGTGCATATACTTTGCATTGAATGGTCACCTCAAGTGTATTTTGTTGATGAAACTGTTAAAAATTTGAAGGCAGAAGTGGCAAGGGGAGCAAAGCTAAAATGCAGCAAATGTGGTCAAAAGGGGGCTGCTCTTGGATGCTATGTTAGATCCTGTAGGAGAACTTATCATGTTCCTTGTGCGATGGAAATCTCAGCTTGCCGTTGGGATGATGAGGAATATCTTATGCTCTGTCCAGCTCATTCTCGTGTCAAATTTCCGTGTGAGAAATCAAGTTCTAGGAAACAGGACTCCCAGAAGCATCCTGCGTCATGTCATTTGGCATCTAAGCTATCAAAAACCCCAATAGTTTTGTCAGATGATAGCAAGCGTTTGGTTTTCTGTGGATCTGCTCTGTCTACAAATGAAAAGATACATTTGATCAATTTTGCAAGTAGGATTGGAGCTACGGTTACCAAGTTTTGGACGCCAGACGTGACACATGTGATTGCAGCAACTGATTCAAACGGAGCATGCGCCAGGACACTTAAAGTTCTTATGGGCATTCTAAATGGGCAATGGATTCTTAAAATGGACTGGGTAACTACAAGCATGGAGGTGATGCGTCCTGTGGAAGAAGAGCCATATGAAATAAGTCTTGATAACTATGGCTGTCAAGGTGGCCCAAAAGCTGGCAGACTTAGGGCATTATTGGCCAATGTGCCCAAGCTATTTAGCGGCTTTAGTATATACTTTGCTGGAGATTACATGTCAGACTATAAGGAGGATCTTGTAGAGTTGGTTGTAGCAGGAGGAGGTTCTGTTTCGCAAAGCAAGGAAGAATTGCAAACAGAAGGCCGTGAATGCAAGGAGACCTCAAAGCTGATCGTTTACAATCTTGATCCTCCACAAGGAAGTAGGTTGGGGGATGAAGTTACAATTCTTTGGGAGAGATTGAACGAGGCAGAGGATTTAGCTGCTACCACTGGTTCACAAGTCGTTGGTCACACATGGATTTTGGAGTCAATTGCCTCATGCAAGTTACAGCCTTTTATTAGTTAG 2163 0.4239 MEDSGKHGNNSKFLNPWMLQFQKLGLELKCPLCLNLFRRPMLLPCNHIFCSSCIADCIRPSSECAVCNIHYAQRDLRSLPIVENMVAIYKSLDSAFYANLSQHRSSDGLPFLERCEALSNVTFNHKMSMEPSKTSLADLQREQSVLSQAMVERVKVPLSFDHSMEIDIGKNHKYEKSGNVVHGKDKEFDVSCKEEILMKCSQLDGRAHEDCGLVEMDINQVTQSSLGSPPFCDTKGSDNDCSDQDSEHRMPAERLESSSSKREIKENEILEKRIQLRSESSASETEGLVRDSKRPKNVSHDNDDIQPNGTRQSKPMMSECNMDLKFGIDLDSSSNTSVCSFCQSSRTSEVTGPMLHYKNGNLVTGIAALQPNVIHVHILCIEWSPQVYFVDETVKNLKAEVARGAKLKCSKCGQKGAALGCYVRSCRRTYHVPCAMEISACRWDDEEYLMLCPAHSRVKFPCEKSSSRKQDSQKHPASCHLASKLSKTPIVLSDDSKRLVFCGSALSTNEKIHLINFASRIGATVTKFWTPDVTHVIAATDSNGACARTLKVLMGILNGQWILKMDWVTTSMEVMRPVEEEPYEISLDNYGCQGGPKAGRLRALLANVPKLFSGFSIYFAGDYMSDYKEDLVELVVAGGGSVSQSKEELQTEGRECKETSKLIVYNLDPPQGSRLGDEVTILWERLNEAEDLAATTGSQVVGHTWILESIASCKLQPFIS 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1403 720 MobiDBLite consensus disorder prediction 302 316 - -
Lele07g1403 720 SUPERFAMILY RING/U-box 27 90 - -
Lele07g1403 720 Pfam PHD-like zinc-binding domain 377 456 - -
Lele07g1403 720 Gene3D BRCT domain 608 720 IPR036420 -
Lele07g1403 720 CDD BRCT_Bard1_rpt1 499 578 - -
Lele07g1403 720 SMART PHD_3 408 456 IPR001965 -
Lele07g1403 720 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Lele07g1403 720 MobiDBLite consensus disorder prediction 238 301 - -
Lele07g1403 720 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 243 717 IPR031099 GO:0006281|GO:0006974
Lele07g1403 720 FunFam Breast cancer type 1 susceptibility protein homolog 496 602 - -
Lele07g1403 720 Pfam BRCA1 C Terminus (BRCT) domain 513 571 IPR001357 -
Lele07g1403 720 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 100 IPR013083 -
Lele07g1403 720 SMART ring_2 30 67 IPR001841 -
Lele07g1403 720 SMART ring_2 409 455 IPR001841 -
Lele07g1403 720 ProSiteProfiles BRCT domain profile. 607 720 IPR001357 -
Lele07g1403 720 ProSiteProfiles Zinc finger RING-type profile. 30 68 IPR001841 -
Lele07g1403 720 SMART BRCT_7 489 575 IPR001357 -
Lele07g1403 720 SMART BRCT_7 609 713 IPR001357 -
Lele07g1403 720 CDD ePHD 339 455 - -
Lele07g1403 720 FunFam Breast cancer associated RING 1 333 458 - -
Lele07g1403 720 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 333 458 IPR013083 -
Lele07g1403 720 ProSiteProfiles BRCT domain profile. 499 585 IPR001357 -
Lele07g1403 720 Gene3D BRCT domain 495 601 IPR036420 -
Lele07g1403 720 MobiDBLite consensus disorder prediction 225 316 - -
Lele07g1403 720 ProSiteProfiles Extended PHD (ePHD) domain profile. 336 456 IPR034732 -
Lele07g1403 720 Pfam RING-type zinc-finger 30 60 IPR027370 -
Lele07g1403 720 SUPERFAMILY BRCT domain 611 718 IPR036420 -
Lele07g1403 720 SUPERFAMILY BRCT domain 499 586 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1403 Lele-ChrLele07 8525250 8530034 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g1403 07 8525250 8530034 Lele07g1403 07 8525250 8530034 ECH
Lele05g1346 05 8449265 8454568 Lele07g1403 07 8525250 8530034 hybridization
Lele06g1209 06 7596542 7597343 Lele07g1403 07 8525250 8530034 hybridization