Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1400 ATGATTACAAGAAGCAGTTGGTTACAATCGTCCAAACGTTTATCACCTAATTCTGATATCTGGTTATATGCCAACCTCCAAGAAAAAACAATTTGTGTAGCATTTTTTTGGAAAATAATGGAAGCACGCCCTGCTTTTTCCATTGAAAGATCAAGTGCAAAGCAACTCAGTAGCATGGGAGTGTCTGGAGCACTGTCTTCATCCCTGCCTGTCCACCCAACACCCATAGAAGAGACATATTCCAAGCTACCTGATTCTCAGCAGGCTTTTGTGGAAAAAGAGCGCATGGCAAGACCTCTTACTCATTCAAGTCATTTAAATTCCAGCGGAGCAGTTGGGCACATGTTTTCATCATCCCCTGGATATTCTACCGATCTTCATCACTCATCCCTTTCACCTCATGGAAAGCACTCAAGAAATCCGCATTTTATTTCACAGTCTTCAAGTAACATGGTATCATTGCCATTGTCATATTATTCAAGTACTGGACCACTGACTTCTACAACATCAAGTTGTTATTCCAAAGAAAGTAATGGGTCCTGGGCTACAGATTCCGTGCCAAACATTCTTGATTTTCCTGTAAATACTTCCATTAAGGATAGTCAAGTAGAAAGTAGTGCCTGCAATATAATGGCACCTGACGAGTATGGTAAGAAAAATGATTGGCAAGAGTGGGCTGACCAACTGATCAATGATGACGATGCATTGACTTCTAACTGGAATGACATTCTTGTTGACCCCAGCATTCATGATCTTGAACCAAAGGTGTCATGCCAGACTTCAAAATCATCTTCACAATTGCCAGGGCTGCAGTCCCAAGGTCACCAGCAACTTCCAGCTTCGTCGGGAGAAAAACAAGTTATTGCTCCACCCTCTTCCTCAGCAAATTCTGCTCCTGCCAAGCCACGAATGCGTTGGACGCCAGAGCTTCATGTGGCCTTTGTGGAGGCTGTCAACCAACTTGGTGGCAGTGAAAGAGCAACCCCTAAGGGTGTGCTGAAGCTTATGAAAGTTGAAGGCTTAACAATATATCACGTTAAAAGCCACTTGCAGAAATATAGGACAGCTAGATATAGACCAGACTCATCTGAAGGATCCTCGGAGAAAAAGTTAACTCCAATTGAAGAGATGTCAGCTCTAGACTTAAAAACTGGCATGGAGCTCACTGAAGCTCTGAGACTGCAGATGGAGGTTCAGAAGCGCCTGCATGAACAACTAGAGATTCAAAGGAATTTACAGTTGCGGATTGAAGAACAAGGAAGGTACCTCCAAATGATGTTTGAGAAGCAATGCAAATCTGGCGTTGAAAAGTTTAAGGCAGCACCATCTGCCATTGAGGATCCCTCTGGAGTGTCATCAGATGCTATTAAAGATTCTTCCGCCAAAACTGAAGGGGATGTCTCCCTAGTGGACCATTGCAAGTCAGGAACTGAACAAGAGAATGGCAACGCCGTAGTTGAAGAAAGCTCACTGAAAGTTGTTGAGAAGCATAATGCTCCTGAAAGTCAAACTTCTGACAATCCTAAGCAACATACGAGTGAAGATGATGTTGATGCTCAACCATCAAAGCGTCAAAGGACAGACGAATAA 1590 0.4327 MITRSSWLQSSKRLSPNSDIWLYANLQEKTICVAFFWKIMEARPAFSIERSSAKQLSSMGVSGALSSSLPVHPTPIEETYSKLPDSQQAFVEKERMARPLTHSSHLNSSGAVGHMFSSSPGYSTDLHHSSLSPHGKHSRNPHFISQSSSNMVSLPLSYYSSTGPLTSTTSSCYSKESNGSWATDSVPNILDFPVNTSIKDSQVESSACNIMAPDEYGKKNDWQEWADQLINDDDALTSNWNDILVDPSIHDLEPKVSCQTSKSSSQLPGLQSQGHQQLPASSGEKQVIAPPSSSANSAPAKPRMRWTPELHVAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPDSSEGSSEKKLTPIEEMSALDLKTGMELTEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGVEKFKAAPSAIEDPSGVSSDAIKDSSAKTEGDVSLVDHCKSGTEQENGNAVVEESSLKVVEKHNAPESQTSDNPKQHTSEDDVDAQPSKRQRTDE 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1400 529 MobiDBLite consensus disorder prediction 459 473 - -
Lele07g1400 529 Pfam Myb-like DNA-binding domain 303 354 IPR001005 -
Lele07g1400 529 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 298 358 IPR017930 -
Lele07g1400 529 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 301 355 IPR006447 GO:0003677
Lele07g1400 529 Gene3D - 300 359 - -
Lele07g1400 529 MobiDBLite consensus disorder prediction 256 302 - -
Lele07g1400 529 Coils Coil 389 409 - -
Lele07g1400 529 MobiDBLite consensus disorder prediction 444 529 - -
Lele07g1400 529 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 272 511 IPR044848 GO:0003700
Lele07g1400 529 MobiDBLite consensus disorder prediction 121 146 - -
Lele07g1400 529 MobiDBLite consensus disorder prediction 256 300 - -
Lele07g1400 529 Pfam MYB-CC type transfactor, LHEQLE motif 386 433 IPR025756 -
Lele07g1400 529 MobiDBLite consensus disorder prediction 508 529 - -
Lele07g1400 529 SUPERFAMILY Homeodomain-like 299 355 IPR009057 -
Lele07g1400 529 FunFam Myb family transcription factor 300 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1400 Lele-ChrLele07 8511307 8515549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1400 40 443 G2-like Transcription Factor Family AT4G28610 49.639 1.95e-108 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele07g1400 Myb_DNA-binding 9.6e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g1400 07 8511307 8515549 Lele07g1400 07 8511307 8515549 ECH
Lele05g1343 05 8432276 8438837 Lele07g1400 07 8511307 8515549 hybridization
Lele06g1205 06 7580779 7585524 Lele07g1400 07 8511307 8515549 hybridization