LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele07g1396	ATGGCACCCAATCCAAGGGTCGCTGCAGCCTATCGTGCAATGACTGTTCTTGGCATTAAGGAAGTAAAAGTCAAACCGGTATTGAAGCAACTTCTTAAATTGTATGATAAGAACTGGGAACTTATTGAACAAGAGAACTATAGAGCTCTTGCAGATGCTATATTTGAGCAGGAGGAAAAAGAGGGAAAGAGGAAAACAAGCCAGAACAATGATGAAGGAGAAATGGAGGGTGAAGAGGCTCAGATGCAGGATGAACCAGTGCGACCTTTGAAGAGGTTGCGATTAAGAGGCCAAGAGAATCAGGCTTCACATACTCTGAGTATTTGTGGAACCAGCTCAGCTGCCTCCCCATCTAAAATGCCTAAAGTAGAAGGTGATGAATTGCCTGAAAGTTGTCCCAGCCAGCAGACTCAATACAATGCAATGTCGCCTCAGTCCAATAGAAATGCAGAGACTGAAGTTCGCCCTGTTCCAGTGCGAGATAGTTTTGTTGACAAGGGAAAGCAACCTTTATCACCTCAAGCTGCTCCTGGAGGAAGAAGACTCGGATCTAAAAGAGCATCTCCATCATTGCCAATTAAAGAACCTGCAGCTGAACAGAGAATTGTGCCATTACAGAAAAACCAGTTGCCCTATACTCACGCATTAATCAAGCCTAAAGATGAGCCTATTGATGAACTGGTAGATTATGATGCTCCTATTGCAACAATTCATCCCGAAATGCCGGGTGGAAGAGACCCTCCAATGCAGCATGACGCAACTAGAAAACAAGACAGGAATGGTCCTTTAATGTTTAAATGCAGAGATGAAGGTAGAGGGGAAGGTATTCGTGATTCATCAGATGAAGCAAACCATAAGGTTGCAACAAACCAAGAGTGTTCTACCATAGAGATAGCCTCCTCAACATCAGGAGAGGTAAAAATTACTATAAGCTGCAGTTCTGCTCTTGGGAGATCAGATTTTCGTTTGCCTAGTCGAGATCAACTTTTAAAAATGATGGAGGATAAATGTCTGCAATCATATAATATCACTGACCCAAATTTTTCTATCATGACAATGTTGAGAGACATGTGTGACTGCGTGTTGGAATTCAGAACTGATTCAAATGATGACTCACAGGAAGGATCTGAAATGATGACATCAAGTCTAAATGTATTGAAGGAATCTAAGGCATGTGATTCTCTGATTATCAGAGGCAATACAGAAGATTTAGGAATGCATGCTGGCACATCGAGTCTAAATGTATTGAAGGAATCTAAGGCATGTGATTCTCTGATTATCAGAGGTAATACAGAAGATTTAGGAATTCGTGCTGGCACATCAAATGGATCAATCAACATTCAGTCTTCTGCACTGAATGCATCTCGCATTTCCACTTCTCCCCTGCTTTTGAGTATGAATGATGCTGTACTAGTAACCAACAAGGCCAGAAGTGATTTTCCAGAGTGTGATGACGGAAAGGGGCTGGAGGATTCTATATCTGCACATTCAGGTAGTTTAGTTGTTGTTCAACAGCATCAGCTTACTCCCGGTGATCTATGGTCTCTTCATGGTGCTGACGACCTTTCAAAAGGAGAAGAAAATATCAGAATTCCGTGGGTGAATGATATAACGAATGACTTCCCTCCACCTTTTCACTATCTGCACCAAAGCATTGGTTTCAAAGATGCTTATGTTAACTGGTGTCTTTCAAACATCAAGTGTGAGGATTACTGTTCGACTTGTTTGGGCGATTGTCTTCTGTGCCCAACATCTTGTGTTTGTGCAAATAAAGTTGAGGGAGGATTTGCGTACACACCTGAAGGACTACTGAAGGAAAAGTTCTTGGATGAGTGTATTACCATTACCCGCAATCCTCAACGCCATCAGTTCTATTGTAAAATCTGCCCCCTTGAAAGAGCAAAGAACGATGATTTTTTAGAACCATGTAAAGGACACTTGAAGAGAAAGTTTATCAAAGAATGTTGGGTAAAATGTGGCTGTGTGAAACAGTGTGGCAATAGGGTTGTCCAACGAGGAATCACATTCAAATTGCAGGTGTGTTTTACTTCAGAAGGAAAAGGATGGGGTCTTCGTACCTTAGAGGAGCTTCCAAAAGGTGCATTTGTGTGTGAGTTTGTGGGAGAAATATTAACCGTCAAAGAGTTGCAAGAGAGGAACATGCAGTGTGCTCAAAATGGAACGTACACGTACCCAGTTCTGTTAGACGCAGATTGGGATTCAGGATTTATGAAAGATAAAGAAGCTCTCTGCTTGGATGCAGCATCTTATGGGAATATTGCCAGGTTTATTAATCACAGATGTTTGGATGCAAACTTGATTGAGATCCCAGTTGAAGTTGAAACCTCGAATCATCGCTACTTTCATCTTGCTTTCTTCACATCCAGAAAAGTAACTGCACTGGAAGAGCTAACTTGGGATTATGGTATTGACTTTGATGACAATGAGGGTCCTGTTAAGCCATTCTCTTGCAGATGTGGCAGCAAGTTTTGCAGGAAGATGAAGCGATCAAATAGCAAGCTAAGCTCCATTTTGGATTCAGTGGATGGTCTTGATCTATGGATTGAATTGGTTTAG	2577	0.4175	MAPNPRVAAAYRAMTVLGIKEVKVKPVLKQLLKLYDKNWELIEQENYRALADAIFEQEEKEGKRKTSQNNDEGEMEGEEAQMQDEPVRPLKRLRLRGQENQASHTLSICGTSSAASPSKMPKVEGDELPESCPSQQTQYNAMSPQSNRNAETEVRPVPVRDSFVDKGKQPLSPQAAPGGRRLGSKRASPSLPIKEPAAEQRIVPLQKNQLPYTHALIKPKDEPIDELVDYDAPIATIHPEMPGGRDPPMQHDATRKQDRNGPLMFKCRDEGRGEGIRDSSDEANHKVATNQECSTIEIASSTSGEVKITISCSSALGRSDFRLPSRDQLLKMMEDKCLQSYNITDPNFSIMTMLRDMCDCVLEFRTDSNDDSQEGSEMMTSSLNVLKESKACDSLIIRGNTEDLGMHAGTSSLNVLKESKACDSLIIRGNTEDLGIRAGTSNGSINIQSSALNASRISTSPLLLSMNDAVLVTNKARSDFPECDDGKGLEDSISAHSGSLVVVQQHQLTPGDLWSLHGADDLSKGEENIRIPWVNDITNDFPPPFHYLHQSIGFKDAYVNWCLSNIKCEDYCSTCLGDCLLCPTSCVCANKVEGGFAYTPEGLLKEKFLDECITITRNPQRHQFYCKICPLERAKNDDFLEPCKGHLKRKFIKECWVKCGCVKQCGNRVVQRGITFKLQVCFTSEGKGWGLRTLEELPKGAFVCEFVGEILTVKELQERNMQCAQNGTYTYPVLLDADWDSGFMKDKEALCLDAASYGNIARFINHRCLDANLIEIPVEVETSNHRYFHLAFFTSRKVTALEELTWDYGIDFDDNEGPVKPFSCRCGSKFCRKMKRSNSKLSSILDSVDGLDLWIELV	858

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele07g1396	858	ProSiteProfiles	Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile.	1	858	IPR025776	-
	Lele07g1396	858	Pfam	SET domain	688	809	IPR001214	GO:0005515
	Lele07g1396	858	Pfam	Pre-SET motif	523	668	IPR007728	GO:0005634\|GO:0008270\|GO:0018024\|GO:0034968
	Lele07g1396	858	SMART	set_7	676	815	IPR001214	GO:0005515
	Lele07g1396	858	MobiDBLite	consensus disorder prediction	130	152	-	-
	Lele07g1396	858	PANTHER	INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED	1	840	-	-
	Lele07g1396	858	MobiDBLite	consensus disorder prediction	249	263	-	-
	Lele07g1396	858	Pfam	Ubiquitin-binding WIYLD domain	6	60	IPR018848	GO:0018024
	Lele07g1396	858	MobiDBLite	consensus disorder prediction	98	196	-	-
	Lele07g1396	858	ProSiteProfiles	SET domain profile.	676	809	IPR001214	GO:0005515
	Lele07g1396	858	Gene3D	SET domain	515	817	IPR046341	-
	Lele07g1396	858	SMART	preset_2	519	660	IPR007728	GO:0005634\|GO:0008270\|GO:0018024\|GO:0034968
	Lele07g1396	858	SUPERFAMILY	SET domain	528	833	IPR046341	-
	Lele07g1396	858	MobiDBLite	consensus disorder prediction	99	118	-	-
	Lele07g1396	858	MobiDBLite	consensus disorder prediction	58	72	-	-
	Lele07g1396	858	MobiDBLite	consensus disorder prediction	239	263	-	-
	Lele07g1396	858	MobiDBLite	consensus disorder prediction	58	86	-	-
	Lele07g1396	858	CDD	SET_SETDB-like	543	809	-	-
	Lele07g1396	858	Gene3D	-	1	60	IPR043017	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele07g1396	Lele-ChrLele07	8494398	8499098	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele07g1396	652	834	C2H2 Transcription Factor Family	AT2G23740	38.624	3.59e-29	124

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Lele07g1396		Pre-SET	4.3e-14	No_clan

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele07g1396	07	8494398	8499098	Lele07g1396	07	8494398	8499098	ECH
	Lele06g1200	06	7561380	7565907	Lele07g1396	07	8494398	8499098	hybridization