Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1388 ATGATTGGCCCCTGGGCCCTTGACAAGCGAAATACGCCGGCGACCAAGCACCGAGGAGGGAGGGAGGGACCCGAGACGGCCACGTGGCGAGGCACTGCCACGGCGGAATGGAAATCGCGGCTGCCGAAGCTGCCTATGAATGGTTCTGAGGGCATAGGCTGGTTCGCGATGCTGGGTGGTTCTACTGGTTGGTCGATGTTAACGGTGTCAAAGGAAGATAATTTGGTAATGTCTGCGGAGGATTCTTCATGCCCAGATGAATCTGAGCTTGAATTGGGTCTTGGCTTAAGCCTTTCTCGTCGTCCTGGGCTCAAGTCCCAACCACCTTCCACGAATCAATATACTAGAATATTAACCGCTAAAGATTTTCCTTCCATGGTTTCTTCTTGTACTGCAACTTCCTTAGCTTCATCAACCTCCTCCTCATCTTCTTCTTCCTCTTGCTCTCCTTCCTCTGTGACCAGGCCTAACGCCACTGCTGGCACCAAGAGAACTGCCGATTCTGTTGTTGCTACTAATGGCCCCTGTCAGGTTGTAGGATGGCCTCCCATTGGAGCATATCGAATGAATAGTTTTAACAATCATGCAAAGTCATCTGCCACAAATGTGTTCAACTTAGTGACTGAGAAAAGTAAGAGCAATAATACAGAGGCAAGGAGGAGGACTACTGATAACGGCATCGATAATAGCAATGTTAGTGCCAAAGGTAAAGGGCACCTGAAGAGTTCCTGGTTTGTGAAGGTAAATATGGATGGGTTACCAATTGGAAGAAAGGTTGATTTGAGCTCTCATAATTCCTATGAAAGCTTAGCACTTGCTTTGGAGGAGATGTTCGATGAACACGCTGCAGTTGTTTCTAGTAAAAGATCAAATGGGGAAGAACATGGCGTTATAGTCGGAGCAGAAAGACGGTCAAAATTGCTGGATGGATCTTCCAAGTTTGTACTTACTTATCAAGACAAGGATGGAGACTGGATGCTTGTCGGAGATGTACCTTGGGGGATGTTTCTAAGCTCTGTGAGGAGGCTAAGAATCATGAGAACATCTGAGACTAATGGACTGGCACCAAAGTGTGAAGAAAAGAACAGCAGACAGAGAAGTTAG 1104 0.4719 MIGPWALDKRNTPATKHRGGREGPETATWRGTATAEWKSRLPKLPMNGSEGIGWFAMLGGSTGWSMLTVSKEDNLVMSAEDSSCPDESELELGLGLSLSRRPGLKSQPPSTNQYTRILTAKDFPSMVSSCTATSLASSTSSSSSSSSCSPSSVTRPNATAGTKRTADSVVATNGPCQVVGWPPIGAYRMNSFNNHAKSSATNVFNLVTEKSKSNNTEARRRTTDNGIDNSNVSAKGKGHLKSSWFVKVNMDGLPIGRKVDLSSHNSYESLALALEEMFDEHAAVVSSKRSNGEEHGVIVGAERRSKLLDGSSKFVLTYQDKDGDWMLVGDVPWGMFLSSVRRLRIMRTSETNGLAPKCEEKNSRQRS 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1388 367 Gene3D - 239 360 - -
Lele07g1388 367 Pfam AUX/IAA family 89 357 IPR033389 -
Lele07g1388 367 ProSiteProfiles PB1 domain profile. 243 350 IPR000270 GO:0005515
Lele07g1388 367 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 89 352 IPR003311 GO:0005634|GO:0006355
Lele07g1388 367 MobiDBLite consensus disorder prediction 136 166 - -
Lele07g1388 367 FunFam Auxin-responsive protein 239 358 - -
Lele07g1388 367 SUPERFAMILY CAD & PB1 domains 240 346 - -
Lele07g1388 367 MobiDBLite consensus disorder prediction 1 27 - -
Lele07g1388 367 MobiDBLite consensus disorder prediction 211 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1388 Lele-ChrLele07 8443426 8448133 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1388 247 357 B3 DNA Binding Superfamily AT1G59750 33.333 4.93e-13 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele07g1388 AUX_IAA 1.2e-60 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2358 13 29319269 29324212 Lele07g1388 07 8443426 8448133 CCT
Lele14g2290 14 27655012 27659773 Lele07g1388 07 8443426 8448133 CCT
Lele15g0060 15 358037 363837 Lele07g1388 07 8443426 8448133 CCT
Lele16g0064 16 399884 401718 Lele07g1388 07 8443426 8448133 CCT
Lele07g1388 07 8443426 8448133 Lele07g1388 07 8443426 8448133 ECH
Lele06g1194 06 7523029 7526549 Lele07g1388 07 8443426 8448133 hybridization