Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1382 ATGGAGGACGATGCTGATATATACGATGGTGTTAGAGCTCAATTCCCTCTTAGTTTTGGAAAGCAGTCCAAGTCGCAAACCCCTCTCGAAGCCGTCCACAATGCCACTCGTCGTTCCAGTTCCAATCTTAGCTCTAATCCCTCGGCCACGACCACCACCGAGACCAAAAGTACCAATAGCCTCCTTTCTATCTCCTCTTCCAAGGCCTGGCTTCATTCCCTCCGCAACTCCAAAAACCCTAACCCTGATTCTACCGCCGATCGTGGTGGTAGTGCTTCCATTATTGGGTCATCTCGGCCACCTCTGCCGGTGGAATCTGACGAGGACGGCGGTGTTATGGTGGGACCGCCTCGGCCACCTGAGGGAGAAGAGGATGATGGTGCGATGATTGGGCCTCCTCCACCACCTGTTGGTTTAGGTTCCGGTGAAGAAGGGTATGACGATGGGGAGATGATTGGCCCGCCAAAACCTCCTCCCGGTTCAAATTTGGGTGCCTCAAGTTCTGAGGACGATTCAGATAAAGACGAGTTGGGGAATCGGTTTCGAATTCCCCTTAGTAATGAGATCGCTCTCCAGGGCCACAATAAGGTTGTGTCGGCTCTTGCTGTGGATCACTCTGGGTCTAGAGTACTTTCTGGAAGTTATGACTATACAGTGCATATGTATGACTTTCAAGGAATGAGTTCGCGGTTGGAATCATTTCGACAATTGGAGCCATTTGAAGGTCATCAAGTTCGCAACCTAAGCTGGAGTCCAAGTGCAGATCGCTTTCTGTGTGTGACAGGGTCAGCTCAAGCAAAGATCTATGATCGAGATGGGCTTACTTTGGGAGAGTTTGTGAAAGGGGACATGTATATCCGTGATCTAAAAAATACCAAAGGCCACATATCTGGATTGACATGGGGAGAATGGAACCCAAAAACCAAGGAAACAATTTTAACATCATCAGAGGATGGATCGCTGCGCATATGGGATGTAAACGACTTCAAAAGTCAGAAGCAGGTTATCAAACCAACGCTTGCAAGACCTGGAAGAGTTCCTGTCACCACATGTGCATGGGATCGTGACGGTAAATGCATTGCTGGTGGTATTGGAGATGGTTCTATACAGATTTGGAGTATTAAGCCTGGATGGGGAAGTCGGCCAGATATATATATTGACAAAGGGCATTCTGATGATATTACTGGTCTGAAATTTTCTAGTGATGGGAGAGTTTTACTGTCAAGAAGCTTTGATGGTTCATTGAAGGTCTGGGATTTGCGCAAAATAAAGGAACCTCTAAAGGTATTTGAAGATCTTCCGAATAATTACGGGCAAACAAATATCACTTTTAGCCCTGATGAACGACTTTTTCTTACCGGAACATCTATTGAAAGAGAGAGTTCAAGTGGAGGTTTATTGTGCTTTTATGATCGCACAAACCTTGAGCTTGTTTCAAGAGTTGGTATATCGCCCACTTGTAGTGTTGTACAATGTGCTTGGCATCCTAAACTGAATCAGATCTTTGCAACGGTTGGCGACAAAAGCCAAGGAGGAACTCACGTACTATATGACCCAACCCTCAGTGAGAGAGGAGCTCTCGTTTGCGTTGCACGTGCGCCAAGGAAAAAATCCATTGATGATTTTGAGGCAAAACCGGTTGTTCACAATCCTCATGCCTTGCCACTATTTAGAGATCAGCCAAGCCGTAAACGTCAGCGACAGAAAATACTGAAGGATCCAGTGAAATCCCATAAGCCTGAACTTCCCATAACAGGGCCTGGTTTTGGTGGGCGAGTTGGTGTAAGTCAAGGAAGCTTGCTGACTCAATATCTTCTGAAGCAAGGGGGTATGATTAAGGAGACGTGGATGGAAGAAGATCCGAGAGAAGCTATCCTGAAATATGCTGATGTTGCAGCAAATGATCCAAAATTCATTGCTCCAGCATATGCAAAAACCCAGCCTGAGCCTGTCTTCCAAACTTCAGATTCTGACGAGGAAGAGAAACAATAG 1992 0.4634 MEDDADIYDGVRAQFPLSFGKQSKSQTPLEAVHNATRRSSSNLSSNPSATTTTETKSTNSLLSISSSKAWLHSLRNSKNPNPDSTADRGGSASIIGSSRPPLPVESDEDGGVMVGPPRPPEGEEDDGAMIGPPPPPVGLGSGEEGYDDGEMIGPPKPPPGSNLGASSSEDDSDKDELGNRFRIPLSNEIALQGHNKVVSALAVDHSGSRVLSGSYDYTVHMYDFQGMSSRLESFRQLEPFEGHQVRNLSWSPSADRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHISGLTWGEWNPKTKETILTSSEDGSLRIWDVNDFKSQKQVIKPTLARPGRVPVTTCAWDRDGKCIAGGIGDGSIQIWSIKPGWGSRPDIYIDKGHSDDITGLKFSSDGRVLLSRSFDGSLKVWDLRKIKEPLKVFEDLPNNYGQTNITFSPDERLFLTGTSIERESSSGGLLCFYDRTNLELVSRVGISPTCSVVQCAWHPKLNQIFATVGDKSQGGTHVLYDPTLSERGALVCVARAPRKKSIDDFEAKPVVHNPHALPLFRDQPSRKRQRQKILKDPVKSHKPELPITGPGFGGRVGVSQGSLLTQYLLKQGGMIKETWMEEDPREAILKYADVAANDPKFIAPAYAKTQPEPVFQTSDSDEEEKQ 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1382 663 FunFam WD repeat-containing protein 70 280 522 - -
Lele07g1382 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 292 334 IPR001680 GO:0005515
Lele07g1382 663 Gene3D - 159 279 IPR015943 GO:0005515
Lele07g1382 663 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 191 225 - -
Lele07g1382 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 191 232 IPR001680 GO:0005515
Lele07g1382 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 387 421 IPR001680 GO:0005515
Lele07g1382 663 PANTHER GASTRULATION DEFECTIVE PROTEIN 1-RELATED 9 662 - -
Lele07g1382 663 MobiDBLite consensus disorder prediction 19 61 - -
Lele07g1382 663 ProSitePatterns Trp-Asp (WD) repeats signature. 312 326 IPR019775 -
Lele07g1382 663 MobiDBLite consensus disorder prediction 73 92 - -
Lele07g1382 663 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 387 421 - -
Lele07g1382 663 Pfam WD domain, G-beta repeat 191 223 IPR001680 GO:0005515
Lele07g1382 663 Pfam WD domain, G-beta repeat 388 419 IPR001680 GO:0005515
Lele07g1382 663 Pfam WD domain, G-beta repeat 347 373 IPR001680 GO:0005515
Lele07g1382 663 Pfam WD domain, G-beta repeat 290 325 IPR001680 GO:0005515
Lele07g1382 663 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 292 327 - -
Lele07g1382 663 PRINTS G protein beta WD-40 repeat signature 312 326 IPR020472 -
Lele07g1382 663 PRINTS G protein beta WD-40 repeat signature 406 420 IPR020472 -
Lele07g1382 663 PRINTS G protein beta WD-40 repeat signature 360 374 IPR020472 -
Lele07g1382 663 Gene3D - 280 521 IPR015943 GO:0005515
Lele07g1382 663 MobiDBLite consensus disorder prediction 642 663 - -
Lele07g1382 663 SUPERFAMILY WD40 repeat-like 179 507 IPR036322 GO:0005515
Lele07g1382 663 CDD WD40 191 509 - -
Lele07g1382 663 MobiDBLite consensus disorder prediction 73 177 - -
Lele07g1382 663 FunFam Nucleotide binding protein 132 279 - -
Lele07g1382 663 SMART WD40_4 184 223 IPR001680 GO:0005515
Lele07g1382 663 SMART WD40_4 380 419 IPR001680 GO:0005515
Lele07g1382 663 SMART WD40_4 233 270 IPR001680 GO:0005515
Lele07g1382 663 SMART WD40_4 333 373 IPR001680 GO:0005515
Lele07g1382 663 SMART WD40_4 282 325 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1382 Lele-ChrLele07 8403837 8407011 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1382 132 435 U-box Gene Family AT1G04510 24.390 1.16e-08 56.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g1382 07 8403837 8407011 Lele07g1382 07 8403837 8407011 ECH
Lele05g1330 05 8338164 8341297 Lele07g1382 07 8403837 8407011 hybridization
Lele06g1190 06 7481603 7484808 Lele07g1382 07 8403837 8407011 hybridization