Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1360 ATGAAAGTTCTTGTCCTGGAGCCTGGAGCCTGGAGCCTGGAGCCTGGAGAGAGAGGAATGGAGAAATGGGTTTTTAAAGAGAATAAGGGTGAGAAATCCCGAAAGGAGAAGAGAGGCAGCATGAATCACTGTGTTCCAGATTTCGAAATTGAAATGGATGATGATGAATATCCGATACCCACGTCTTCTGGAGTGCACCGCCAAAAGAAGCCCTCCGTGCCCGAGGACGATATCATGGAGCTCTTGTGGCAGAATGGCCAGGTCGTTATGCAGAGCCAGAATCATCGGCCTCAGAGAAAACCCCCGCTAGAGAGGTACCACGACAGCATAATTCCAGCCGGTCCGTCGGTGGCGAGGGAGATTCGACCCTCGCAACAATTAGAACAACACTATCAGAATCAACATATCTTCATGCAAGAAGATGAAATGATTTCCTGGCTTCATTATCCCATCGTAGATGATCCTCCATTGGATCATAATTTCTGCGCCGACATCCTCTACTCGCAGTCGCCCACTGTCAATAACATTTCCATGCAAAATCCTGACCGTGTGTCTCAAGCATCGGAACTCCGGCAACCATCGAGGTCGGTCGCTCCACGGCCGCCGATTCCACCTCCGCGGAAGCCGGAGCAGGTGCAGAAGATGATACCGAACTTCGCACACTTCTCGAAACACAATGCGAGAGTTGAAGCAGGACCACCGAGTTCGAAGACGGCGATGAAGGAATTGACGGTGGTAGATTCTTGCGACACTCCGGCCTTGATGGCGTCGGCTTCCAGAGTCTCGGAGACTTTCAGAAACACGGCGGAGCCAACAGAGCGCGATGAGGCTCCTGGAACCCTAAGCACTACTGGAGCTGCAGCGCCTTCGTCAACGTCCATCGGCGGAGATACTGGCTTCAGGGAGCCGACAACGACGTGCGAGATGATGGCAACGTCATCGCCGGGAGGTTCTAGCGGAGGTGCTGAACCGGCAGGGAGACCACCGGCTGAAGATCGGAAACGGAAGGGCCGGGAGCCCGATGAATCGGAGTGCCACAGCGAGGATTTCTACGTTGAATCTGCTGAAGCCAAGAAACAAAATTGTGGATCATCATCTACTAAAAGATCACGTGCTGCGGAGGTTCATAATCTCTCAGAGAGGAGGCGTCGGGATAGGATTAATGAAAAGATGAAAGCCCTGCAAGAACTTATCCCTCGCTGCAATAAGTCCGACAAAGCTTCAATGCTGGATGAAGCAATTGAATACTTGAAGTCACTGCAGTTACAAGTGCAGATGATGTCCATGGGATGTGGGATGGTACCAATGATGTTTCCCGGAATCCAACAGTATATGTCACCAATGGGCATGGGGATGGGAATGGGTATGGGCATGGAAATGGGAATGAATAGGCCTCTAATTCCATTTCCCAATATGTTAGCTGCTTCTGCTATGCCACCGGAGGTGGCGGCTCAATTGGGACCAAGGTTCCCTATGCCCCCTTTCCAAATGCCTCATACCCCTCAGCCTGATTCATCTAGAATGCGAGCTGCAGCTCCAAATCAACCAGAAAATAATATTCTCCCTTCTCTTGTCACATCTGATCCCAATCACTCACGGATCCCAAACTTTAGTGATCCTTATCAGCAATGCCTTGGTCACCACCAGATCCATCTACAGTTCATGCAGAATCAGGCAATGAACATCCCAACTGTCAGCAAACCAAGTACCAGTAAGAGCCATGAAAATGCAGAAAATAATCAACCAGGTCAACCAGGTTAG 1761 0.5054 MKVLVLEPGAWSLEPGERGMEKWVFKENKGEKSRKEKRGSMNHCVPDFEIEMDDDEYPIPTSSGVHRQKKPSVPEDDIMELLWQNGQVVMQSQNHRPQRKPPLERYHDSIIPAGPSVAREIRPSQQLEQHYQNQHIFMQEDEMISWLHYPIVDDPPLDHNFCADILYSQSPTVNNISMQNPDRVSQASELRQPSRSVAPRPPIPPPRKPEQVQKMIPNFAHFSKHNARVEAGPPSSKTAMKELTVVDSCDTPALMASASRVSETFRNTAEPTERDEAPGTLSTTGAAAPSSTSIGGDTGFREPTTTCEMMATSSPGGSSGGAEPAGRPPAEDRKRKGREPDESECHSEDFYVESAEAKKQNCGSSSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMSPMGMGMGMGMGMEMGMNRPLIPFPNMLAASAMPPEVAAQLGPRFPMPPFQMPHTPQPDSSRMRAAAPNQPENNILPSLVTSDPNHSRIPNFSDPYQQCLGHHQIHLQFMQNQAMNIPTVSKPSTSKSHENAENNQPGQPG 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1360 586 MobiDBLite consensus disorder prediction 501 536 - -
Lele07g1360 586 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 374 450 IPR036638 GO:0046983
Lele07g1360 586 MobiDBLite consensus disorder prediction 358 372 - -
Lele07g1360 586 Gene3D - 366 429 IPR036638 GO:0046983
Lele07g1360 586 FunFam Basic helix-loop-helix transcription factor 366 429 - -
Lele07g1360 586 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 371 420 IPR011598 GO:0046983
Lele07g1360 586 MobiDBLite consensus disorder prediction 197 211 - -
Lele07g1360 586 CDD bHLH_AtPIF_like 371 434 - -
Lele07g1360 586 Coils Coil 377 397 - -
Lele07g1360 586 MobiDBLite consensus disorder prediction 257 382 - -
Lele07g1360 586 MobiDBLite consensus disorder prediction 493 536 - -
Lele07g1360 586 SMART finulus 377 426 IPR011598 GO:0046983
Lele07g1360 586 MobiDBLite consensus disorder prediction 174 211 - -
Lele07g1360 586 MobiDBLite consensus disorder prediction 277 319 - -
Lele07g1360 586 Pfam Helix-loop-helix DNA-binding domain 375 421 IPR011598 GO:0046983
Lele07g1360 586 MobiDBLite consensus disorder prediction 327 355 - -
Lele07g1360 586 MobiDBLite consensus disorder prediction 563 586 - -
Lele07g1360 586 MobiDBLite consensus disorder prediction 174 193 - -
Lele07g1360 586 PANTHER TRANSCRIPTION FACTOR PIF3 65 517 IPR044273 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1360 Lele-ChrLele07 8206315 8211412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1360 41 426 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 41.191 1.12e-69 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele07g1360 HLH 7.4e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g1360 07 8206315 8211412 Lele07g1360 07 8206315 8211412 ECH
Lele05g1312 05 8154272 8159368 Lele07g1360 07 8206315 8211412 hybridization
Lele06g1172 06 7290891 7294484 Lele07g1360 07 8206315 8211412 hybridization