Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1345 ATGGCGGCAGCGAGGCGGCTCCGGGACCTGCAAGCCCAATCGGGGAACAGGATCTGCGTTGATTGCTCTCAAAAGAACCCCCAGTGGGCTTCCGTTTCCTATGGAGTTTTCATGTGCTTAGAATGCTCCGGCAAGCATCGTGGCCTCGGTGTCCACATCTCCTTTGTCCGATCCGTTACGATGGATTCCTGGTCCGAAATCCAGATCAAGAAGATGGAAGCAGGTGGTAATGAGCAACTCAACGCCTTCCTCGCCCAGTATGGTATCGCCAAGGAGACTGATATTGTCACCAAATACAATACTAATGCCGCCAGCATTTATAGGGATCGAATTCAGGCCCTTGCCGAGGGACGACCGTGGCGGGATCCACCTGTTGTCAAGGAGAACCTTGGCCCCGGGAAGAGTAAGCCTCCGTTGCCGAAAAGCGGAAATGTTGGAGGCTGGGATAGTTGGGATAACGATGACGCGGTCAGATCTCCCAATGACATCAAGCGCAACATGTCTACAGGGGATGTAAGGGGGTTCAATGGAGCTTCGACCGGTAGCATGCCCGCGAGATCGAGGTCGACAGAGGATATCTACACGCGGTCGCAATTGGAGGCTTCCGCTGCCAACAAAGACAACTTTTTCGCTCGCAAGCAGGCAGAGAACGAATCACGACCCGAAGGGATTCCACCCTCGCAAGGAGGCAAGTACGTTGGATTCGGATCTAGTCCCGCACCTTCCCGAGTGAATAACCAACAAGGCGATGTCTTTTCAGTTATGTCTCAGGGATTTGGTAAATTGTCTTTGGCTGCTGCCTCTGCGGCCCAGTCTGCTGCTAATGTTGTTCAGGCTGGCACTAAAGAGATCGCTACCAAGGTAAAGGATGGTGGCTATGATTACAGAGTCAATGAAACTGTCAATGTTGTCTCTCAGAAGACATCAGAGATAGGACAAAGGACGTGGGGGATTATGAAGGGGGTCATGGCTTTGGCTTCGCAGAAGGTTGAGGAGTACACCAGGGATAACCCCAACTGGCCAAATGATAACTGGCAGAGAAATGAAAATGATAGAAATGGCTATTATCAAGAATATAATCAAGGGAATAAACGTTGGAATTCTTCTACTGGAGGAGGGCAACCTTCGTCAGTTGGGCAGAATGATACGTATCACTCAAGCTCATGGGATGAATGGGACAATAATGATACCAGGAAGAAAGAACCAACTAAAGTATCAGCTGCTCATAACAATGATGGTTGGGCTGGCTGGGATGATCCTAAAGATGATGAATATGATAATTCATACCAGAGTGTATCAAATAAGAATGCAGTTGGTCATAATGGGAAGCCAGGTGAAAGGTGGACAGGAGGAGGCTTTATGTAA 1365 0.4945 MAAARRLRDLQAQSGNRICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNEQLNAFLAQYGIAKETDIVTKYNTNAASIYRDRIQALAEGRPWRDPPVVKENLGPGKSKPPLPKSGNVGGWDSWDNDDAVRSPNDIKRNMSTGDVRGFNGASTGSMPARSRSTEDIYTRSQLEASAANKDNFFARKQAENESRPEGIPPSQGGKYVGFGSSPAPSRVNNQQGDVFSVMSQGFGKLSLAAASAAQSAANVVQAGTKEIATKVKDGGYDYRVNETVNVVSQKTSEIGQRTWGIMKGVMALASQKVEEYTRDNPNWPNDNWQRNENDRNGYYQEYNQGNKRWNSSTGGGQPSSVGQNDTYHSSSWDEWDNNDTRKKEPTKVSAAHNNDGWAGWDDPKDDEYDNSYQSVSNKNAVGHNGKPGERWTGGGFM 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1345 454 CDD ArfGap_ArfGap1 3 117 - -
Lele07g1345 454 MobiDBLite consensus disorder prediction 214 243 - -
Lele07g1345 454 MobiDBLite consensus disorder prediction 334 454 - -
Lele07g1345 454 FunFam ADP-ribosylation factor GTPase-activating protein 1 129 - -
Lele07g1345 454 Gene3D Arf GTPase activating protein 1 124 IPR038508 -
Lele07g1345 454 MobiDBLite consensus disorder prediction 162 192 - -
Lele07g1345 454 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Lele07g1345 454 Pfam Putative GTPase activating protein for Arf 5 94 IPR001164 GO:0005096
Lele07g1345 454 MobiDBLite consensus disorder prediction 118 192 - -
Lele07g1345 454 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Lele07g1345 454 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Lele07g1345 454 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Lele07g1345 454 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 453 IPR044519 GO:0005096|GO:0016192
Lele07g1345 454 SUPERFAMILY ArfGap/RecO-like zinc finger 5 111 IPR037278 -
Lele07g1345 454 SMART arf_gap_3 4 120 IPR001164 GO:0005096
Lele07g1345 454 MobiDBLite consensus disorder prediction 389 406 - -
Lele07g1345 454 MobiDBLite consensus disorder prediction 334 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1345 Lele-ChrLele07 8131965 8134821 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1345 5 87 C2H2 Transcription Factor Family AT4G21160 51.190 6.36e-23 97.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g1345 07 8131965 8134821 Lele13g1856 13 26464271 26467587 CCT
Lele07g1345 07 8131965 8134821 Lele14g1797 14 24832430 24835769 CCT
Lele07g1345 07 8131965 8134821 Lele15g0555 15 3274311 3275877 CCT
Lele07g1345 07 8131965 8134821 Lele16g0569 16 3206358 3207942 CCT
Lele07g1345 07 8131965 8134821 Lele07g1345 07 8131965 8134821 ECH
Lele05g1297 05 8081847 8084417 Lele07g1345 07 8131965 8134821 hybridization
Lele06g1161 06 7210157 7216213 Lele07g1345 07 8131965 8134821 hybridization