Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1329 ATGAAGAGGGAGAGAGAATCCGAGAGCTTGGACCTCGCCAATTGTCTGATCCTGCTGTCTCATCCCCATGCTCCCCAGCAGAGACAGGTTGATACTTCAGAATTTGAGTGCAAGACTTGCAAGAGAAAGTTCTCGTCTTTTCAGGCGCTTGGAGGGCACAGGGCCAGCCACAAGAGGCCGAAGCTCGACGGAGAAGACGACCTGAAAGCAGAGGCCAAATCTCTCAAGTTAGGGAACAAACCCAGAATGCACGAGTGCTCCATTTGTGGCGTCGAATTCTCGTTGGGCCAAGCACTCGGAGGCCACATGAGGAAGCACAGGGCCGCTCTTCACCAAGACGCCAACCCAGTGGAAGACCATGTGATTGCCAAGGTCCCTGTTCTTAAGAGATCTAACAGTACCAGAGTGTTTTGTTTGGACCTCAACTTAACGCCTCTCCAGAATGACTTGAACTTCTTGTTGGGAAATATGGCACCGGCTCTCACTTGA 489 0.5174 MKRERESESLDLANCLILLSHPHAPQQRQVDTSEFECKTCKRKFSSFQALGGHRASHKRPKLDGEDDLKAEAKSLKLGNKPRMHECSICGVEFSLGQALGGHMRKHRAALHQDANPVEDHVIAKVPVLKRSNSTRVFCLDLNLTPLQNDLNFLLGNMAPALT 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1329 162 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 116 IPR013087 -
Lele07g1329 162 ProSiteProfiles Zinc finger C2H2 type domain profile. 35 62 IPR013087 -
Lele07g1329 162 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Lele07g1329 162 SMART c2h2final6 35 57 IPR013087 -
Lele07g1329 162 SMART c2h2final6 84 106 IPR013087 -
Lele07g1329 162 Gene3D Classic Zinc Finger 32 106 - -
Lele07g1329 162 SUPERFAMILY beta-beta-alpha zinc fingers 35 106 IPR036236 -
Lele07g1329 162 Pfam C2H2-type zinc finger 35 60 - -
Lele07g1329 162 Pfam C2H2-type zinc finger 84 108 - -
Lele07g1329 162 PANTHER ZINC FINGER PROTEIN ZAT5 4 148 - -
Lele07g1329 162 ProSitePatterns Zinc finger C2H2 type domain signature. 37 57 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1329 Lele-ChrLele07 8031318 8031806 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1329 1 155 C2H2 Transcription Factor Family AT2G37430 46.154 8.63e-43 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele07g1329 zf-C2H2_6 3.6e-10 CL0361