Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1328 ATGAAAAGACGACATACAGAGAGCTTAGATCTTGCAATCTCTCTAATGCTTCTCTCTCAGCCACCACCACACCACAAGTCCTTGCCTCAAGAATTTGAGTGCAAGACCTGCAAGCGCAAGTTCTCGTCGTTTCAGGCGCTCGGAGGTCACAGAGCCAGCCACAAGAAGCCCAAACTTGATTCCCAAGTAGAGCTTCCAAAACCCAATTCGGAGAAATCGTTGCACGAGTGCTCTATTTGTGGTCAGCGATTCTCTCTGGGCCAAGCTCTAGGCGGCCACATGAGAAAGCACGGAGCCGCCATGAACGACGCCTCTCCTTCCAGAACTGAGGTAGTTCCTGATGTCGCAGTTCTGAAACGATCTAATAGCAGCAAGAGGGTTATGTGCTTGGACTTGAACTTGACCCCTCTAGAGAACGACTTGAAGTTACTTTTTGGGAACAAGGCTCCTTCTGTTAATCTTTCCTTGTTGTGTTGA 477 0.4885 MKRRHTESLDLAISLMLLSQPPPHHKSLPQEFECKTCKRKFSSFQALGGHRASHKKPKLDSQVELPKPNSEKSLHECSICGQRFSLGQALGGHMRKHGAAMNDASPSRTEVVPDVAVLKRSNSSKRVMCLDLNLTPLENDLKLLFGNKAPSVNLSLLC 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1328 158 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Lele07g1328 158 SMART c2h2final6 75 97 IPR013087 -
Lele07g1328 158 SMART c2h2final6 32 54 IPR013087 -
Lele07g1328 158 Gene3D Classic Zinc Finger 30 97 - -
Lele07g1328 158 PANTHER ZINC FINGER PROTEIN ZAT5 30 140 - -
Lele07g1328 158 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Lele07g1328 158 MobiDBLite consensus disorder prediction 48 70 - -
Lele07g1328 158 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Lele07g1328 158 SUPERFAMILY beta-beta-alpha zinc fingers 32 97 IPR036236 -
Lele07g1328 158 Pfam C2H2-type zinc finger 75 97 - -
Lele07g1328 158 Pfam C2H2-type zinc finger 32 57 - -
Lele07g1328 158 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 97 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1328 Lele-ChrLele07 8026628 8027104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1328 7 157 C2H2 Transcription Factor Family AT2G37430 46.061 7.04e-44 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele07g1328 zf-C2H2_6 1.2e-08 CL0361