Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1326 ATGGCCATAGCCGCCATCATTTCTCTTCCTCTCATATCCTCCCCCCATCGTTCTTTTTCGTCCAGCTGCCCCCTTCGTCCTTCAACATCCTTATACGCTTCCCCTTCCAGTTTGCCCTTACTTCGATATTCCGTCAAGTGCCCTAGCTCTCGCATCATAGCTTCTTCAACGAGCATTGAAACCCCCGTGAAAAGTTCGCCCGTTTCATTCTTGGACAGAAAAGAGACCGGTTTTCTCCATTTCGCCAAGTATCACGGCCTCGGCAATGACTTCATTTTGATTGACAACAGAGACTCTCTGGAGCCCAAGATCAGCCCAGATAAAGCTGTTGAACTATGTGATCGTAACTTTGGGATTGGTGCTGATGGAGTTATCTTTGTCATGGCTGGCACCAATGGCGCTGACTATACCATGAGAATCTTCAATTCTGATGGTAGTGAGCCTGAGATGTGTGGAAATGGAATGCGATGCTATGCCAAATTCGTTGCTCAGCTTGACAACTTACAGGGTAAGCAAAGAATTACTGTTCACACTGGTGCTGGCCTGATTATTCCAGAAATCGTTGAGGATGGAAATGTCAGAGTTGACATGGGGGAGCCAGTTCTTAAAGCGTCAGATGTGCCTACTAAATTACCTGCAAATAAGGATCAATCAGTTGTTAAGGCAGAGCTAGATGTAGATGGAGTTATCTGGAATGTATCATGTGTTAGCATGGGAAATCCACATTGTGTAACATTTGGTACAAAAGAAAGTCAGAATATATTGGTCGATGGTTTGAATCTAGCAGAAATTGGTCCTAAGTTTGAACATCACGAGGTGTTTCCCGCACGAACGAACACAGAATTTGTCCAAGTTCTGTCCGATCATCACCTAAAGATGCGTGTTTGGGAGCGTGGAGCAGGAGCAACGCTAGCCTGTGGAACTGGAGCTTGTGCCTTAGTTGTTGCAGCAGTTCTCGAGGGTCGTGCCAAGAGGATTTGCAGGGTTGATCTACCCGGAGGGCCATTGGAGATTGAGTGGAAGGAGGAGAATAATCATGTGTATTTAACTGGCCCAGCTGAATTAGTTTTTTACGGATCTTTACCCCTTTAA 1092 0.4579 MAIAAIISLPLISSPHRSFSSSCPLRPSTSLYASPSSLPLLRYSVKCPSSRIIASSTSIETPVKSSPVSFLDRKETGFLHFAKYHGLGNDFILIDNRDSLEPKISPDKAVELCDRNFGIGADGVIFVMAGTNGADYTMRIFNSDGSEPEMCGNGMRCYAKFVAQLDNLQGKQRITVHTGAGLIIPEIVEDGNVRVDMGEPVLKASDVPTKLPANKDQSVVKAELDVDGVIWNVSCVSMGNPHCVTFGTKESQNILVDGLNLAEIGPKFEHHEVFPARTNTEFVQVLSDHHLKMRVWERGAGATLACGTGACALVVAAVLEGRAKRICRVDLPGGPLEIEWKEENNHVYLTGPAELVFYGSLPL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1326 363 FunFam Diaminopimelate epimerase, chloroplastic 53 202 - -
Lele07g1326 363 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 53 209 - -
Lele07g1326 363 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 213 347 - -
Lele07g1326 363 FunFam Diaminopimelate epimerase chloroplastic 203 350 - -
Lele07g1326 363 SUPERFAMILY Diaminopimelate epimerase-like 223 361 - -
Lele07g1326 363 PANTHER DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC 68 362 IPR001653 GO:0008837|GO:0009089
Lele07g1326 363 Hamap Diaminopimelate epimerase [dapF]. 79 363 IPR001653 GO:0008837|GO:0009089
Lele07g1326 363 SUPERFAMILY Diaminopimelate epimerase-like 79 208 - -
Lele07g1326 363 Pfam Diaminopimelate epimerase 81 202 IPR001653 GO:0008837|GO:0009089
Lele07g1326 363 Pfam Diaminopimelate epimerase 235 356 IPR001653 GO:0008837|GO:0009089
Lele07g1326 363 TIGRFAM DapF: diaminopimelate epimerase 80 361 IPR001653 GO:0008837|GO:0009089
Lele07g1326 363 ProSitePatterns Diaminopimelate epimerase signature. 142 156 IPR018510 GO:0005737|GO:0008837|GO:0009089
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1326 Lele-ChrLele07 8011419 8014133 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1279 05 7964074 7968734 Lele07g1326 07 8011419 8014133 hybridization
Lele06g1141 06 7092034 7101836 Lele07g1326 07 8011419 8014133 hybridization