Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1286 ATGGCTGCTGCTCCGACCAGTCCCAGCGCTGGTGGTAGCCACGAGAGCGGTGATCAGAGTCCCCGCTCTAATGTCAGAGAGCAGGAAAGGTACCTGCCCATCGCCAATATCAGCCGAATCATGAAGAAGGGACTTCCTACTAATGGAAAAATCGCCAAGGATGCCAAGGAGACTGTGCAGGAATGCGTTTCCGAGTTCATCAGCTTTATCACCAGCGAGGCGAGTGATAAGTGTCAGAGGGAAAAGAGGAAGACGGTCAATGGCGATGATTTACTTTGGGCAATGGCAACTTTAGGGTTCGAGGATTACCTCGATCCTCTGAAGATTTATCTGAGCAGATACAGGGAGGGTGATACCAAGGGTTCGGCGAAGGGCGGAGAAGTATCTGCCAAGAAAGATGTTCAACCAAGTCCTACTGCTCAGCTCGACCATGGAGGTTCTTTCTCACAAGGTGTTGACTATACAAATTCTCAGGAAGCTGGTGCCTTGTTAGAAGTTCTTATTCCTAATGAAATTTGCAAAGCATATGGAATGGAGAACCCTAAAACTGCAATAGCTCTGGACTTCTGTCTTCTCGTAAATCCTAATGCATAA 594 0.4798 MAAAPTSPSAGGSHESGDQSPRSNVREQERYLPIANISRIMKKGLPTNGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTVNGDDLLWAMATLGFEDYLDPLKIYLSRYREGDTKGSAKGGEVSAKKDVQPSPTAQLDHGGSFSQGVDYTNSQEAGALLEVLIPNEICKAYGMENPKTAIALDFCLLVNPNA 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1286 197 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lele07g1286 197 MobiDBLite consensus disorder prediction 1 30 - -
Lele07g1286 197 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Lele07g1286 197 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Lele07g1286 197 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Lele07g1286 197 FunFam Nuclear factor Y, subunit B1 21 120 - -
Lele07g1286 197 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Lele07g1286 197 Gene3D Histone, subunit A 18 146 IPR009072 GO:0046982
Lele07g1286 197 SUPERFAMILY Histone-fold 28 129 IPR009072 GO:0046982
Lele07g1286 197 MobiDBLite consensus disorder prediction 134 148 - -
Lele07g1286 197 MobiDBLite consensus disorder prediction 118 148 - -
Lele07g1286 197 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 15 135 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1286 Lele-ChrLele07 7789633 7791301 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1286 18 166 CCAAT-HAP3 Transcription Factor Family AT3G53340 75.484 9.46e-80 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lele07g1286 CBFD_NFYB_HMF 7e-27 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g1286 07 7789633 7791301 Lele08g1094 08 6892821 6897131 ECH
Lele07g1286 07 7789633 7791301 Lele07g1286 07 7789633 7791301 ECH
Lele05g1239 05 7760819 7763370 Lele07g1286 07 7789633 7791301 hybridization
Lele06g1105 06 6883098 6885552 Lele07g1286 07 7789633 7791301 hybridization