Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1268 ATGTTCAATATGTTGTACCTCGGAAAACTTGACACATTGAAACCGTATATTGCTTATGGTCATATTCATATGCTTGTCTGTCTTGATCTTCATATTTTATTTTACTATGGCAATGTCTCAAGCAACGCCCCCCCAGACACTGTTAAGGTATTGAATTCTTCAGATGATTTCTTGCTTCGCAGACATTTATGTAGCGTATCTCAGATGTTTGGAGGTGAGCATGAGCAGAATTGGACTTATATGCATACTGATCAACATAATGTGCAACTAGGTGGGGCTAGCACTTCAGAGAATGGTTCTTTTATTTATCCATTAGAAAATATGTCTATAGATGGCAGCTCTTTGGCTGCTTCTTGGAACAATGCCGCAATGCCAGATGGATATGCATCCTCAAGCATCAACATTGAATTACCCCCTCATCAATCAGATGCATCAAGATCTTCTCATGATCATTTTTTGCGTTCATCAAATCCTGGAACATTTTTCACAGTTTCTGAAAACTATGCTCACCAGCCTTCTCCCAATTATGATAGACAAGCATTTCAAGTTGCCGATGGCGGTTTCTTTGATTTTACAATGGGAAATGGAAGAGGGCCTCACAAAAGAAAGAGCCCTGGAATTCCTTCAGTATGTGAGAGAGGCAGCAGCACAAGCAGATATTTCAGTGCAGGAAGCTCAACTGATCTCCCTATATCTTCAGAAATAAGGCAGGAGAGGCTGAGCTTGGATTCTCAACATCTTCCTTGGGATCATGTTACTATGACACCCCCCTTCAGAGGCAGTGGCCTTTCAATCAGGGGTGAGGGTTCTTTAAGGAATGTTAGAAGTCGATCTGCACTTGATTTGGAATACAACCTTGCTAGGACGCATTTATCTAGCAACCATTTGCACAACTTATCTTCTGGCCCGTCCACTGACCATTCTAGCTCAGTGGGTCTTTCTGGTCATAGTTCTAGTACTATGACAAGGGACTGGAGCCAAATGAACATGTCTCCTGCTCTTGGGAGGGTATTATTGTCTGAATCAAGTGGATATAATCATGAACCGAGTCGCTTGCTAGTTGGAAGTGGCGTCAGTAATGCTTCGGTAGATGTTGCGAGTTACCATCATGAATATAATACAAGCATAAGTCCTACTGTTTCTCAAAGTTTTCACAGTGACCTCATTCACCCTGCTAGGGGAGTTCGAAGTAACTATTCCCAAAGATCTACTCCAACACCAACTCCAACTTTTAGAGCCTCTTCAAGCTCGTGTGTGGGACATATGGTGCCTTCAGATGGTGGATTGCCCATGGGAGCTGAAGGTTTTATGCCTAGACTTCCAAGACCATTGACTGCCATCAGTTGGCGGAATAGTGATAGAAATGGGAGGTCAAGGATGTCTAGCGAGAGATATCGATCACTGGCTGATGAGGCTATTCTTCATGATGGGTTCTCCTCTGAGGGTTTCACGGTTGTTGATCGTGCTCTGCTGTATGGTTCTCGGAATATGATTGATCAGCATAGAGAAATGAGGATGGACATAGACAACATGAGCTATGAGGAATTACTTGCTCTGGGAGAGAGGATTGGTCATGTCAGCACAGGATTGTCTGAGAACATGATTTCCAAGTGTTTGACAGAATCAATATATTGTTCCTCCGAGCAGAGTCAAGAGGAAGGAAGTTGTGTAATCTGCCTGGAAGAGTACAAGTACATGGACGATGTTGGGACACTGAGAAGCTGCGGTCATGACTACCATGTGAGCTGCATTAGAAAGTGGTTATTGATGAAGAACATATGCCCTATCTGCAAAGCTTCTGCTCTTCCTGATGATATGAAGGATAAATAA 1830 0.4301 MFNMLYLGKLDTLKPYIAYGHIHMLVCLDLHILFYYGNVSSNAPPDTVKVLNSSDDFLLRRHLCSVSQMFGGEHEQNWTYMHTDQHNVQLGGASTSENGSFIYPLENMSIDGSSLAASWNNAAMPDGYASSSINIELPPHQSDASRSSHDHFLRSSNPGTFFTVSENYAHQPSPNYDRQAFQVADGGFFDFTMGNGRGPHKRKSPGIPSVCERGSSTSRYFSAGSSTDLPISSEIRQERLSLDSQHLPWDHVTMTPPFRGSGLSIRGEGSLRNVRSRSALDLEYNLARTHLSSNHLHNLSSGPSTDHSSSVGLSGHSSSTMTRDWSQMNMSPALGRVLLSESSGYNHEPSRLLVGSGVSNASVDVASYHHEYNTSISPTVSQSFHSDLIHPARGVRSNYSQRSTPTPTPTFRASSSSCVGHMVPSDGGLPMGAEGFMPRLPRPLTAISWRNSDRNGRSRMSSERYRSLADEAILHDGFSSEGFTVVDRALLYGSRNMIDQHREMRMDIDNMSYEELLALGERIGHVSTGLSENMISKCLTESIYCSSEQSQEEGSCVICLEEYKYMDDVGTLRSCGHDYHVSCIRKWLLMKNICPICKASALPDDMKDK 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1268 609 Pfam Ring finger domain 555 598 IPR001841 -
Lele07g1268 609 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 521 602 IPR013083 -
Lele07g1268 609 ProSiteProfiles Zinc finger RING-type profile. 556 598 IPR001841 -
Lele07g1268 609 SMART ring_2 556 597 IPR001841 -
Lele07g1268 609 MobiDBLite consensus disorder prediction 295 323 - -
Lele07g1268 609 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 521 602 - -
Lele07g1268 609 SUPERFAMILY RING/U-box 546 603 - -
Lele07g1268 609 MobiDBLite consensus disorder prediction 393 418 - -
Lele07g1268 609 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 150 602 IPR045191 GO:0061630
Lele07g1268 609 MobiDBLite consensus disorder prediction 396 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1268 Lele-ChrLele07 7692797 7698665 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1268 61 608 C3H Transcription Factor Family AT2G37150 39.543 1.01e-98 310
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g1268 07 7692797 7698665 Lele07g1268 07 7692797 7698665 ECH
Lele05g1220 05 7655945 7664289 Lele07g1268 07 7692797 7698665 hybridization
Lele06g1087 06 6780639 6783827 Lele07g1268 07 7692797 7698665 hybridization