Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1264 ATGCTTTCTTGTGACCCCTTTTCCCTATCCTCTTCCATCGGAGGCTTCCCTCCTGAACCCAACCCAAACCCTAACCCTAAACTCAATCCCCCTCCCCTCCCTAAGAAGAAGAGGAATCTCCCAGGAACACCAGATCCAGATGCGGAGGTCATCGCTCTCTCGCCTAAGTCCCTCATGGCGACCAACCGATTCATCTGTGAAATATGCAACAAAGGGTTCCAGAGGGACCAAAACCTGCAGCTTCATCGGAGGGGACACAACCTGCCATGGAAGCTGCGACAAAGGTCGAACAAGGAGGTCCGGAAGAAGGTGTACATATGCCCAGAGAAGACATGCGTACACCACGACCCTTCCAGAGCATTGGGGGACCTCACCGGGATAAAGAAGCATTATAGCAGAAAACACGGGGAGAAGAAATGGAAGTGCGACAAGTGTTCGAAGAAATACGCAGTCCAGTCCGATTGGAAAGCTCACACAAAAACTTGTGGTACTAGAGAATATAAGTGCGACTGTGGTACTCTCTTCTCTAGGAAGGATAGTTTCATCACCCACAGAGCTTTCTGTGATGCATTGACAGAAGAGGGTACGAGACTCACCTCAGTTGGTACGTCGAATCTAAATTTTAAAAACGATGAGAGTGTGATGAGTTCTAACTCTCAGCTTAGCTCGGCACATGGATTTGGCATTTCGCAATTCAGTGCAAATGGGTTTCTTTCAGAATTTGATGGAATGGGCATGAGTATGGTGGGTGGTGCTGACCAGCAAATGAGGCCGAATTTGTCGCTGTGGTTGAACCAGGTGGGAAATAATCCTCGGATCAATAATCCTCTAGAAGTTGGACCTAATTCTGGTCTTTATGTGTCATCTTCAAGTTCTTCAGGTTTGCCTGAGATCAATATGCAAATGCCTCAACCTAATAATACCTTCTCTCCTTCTTTGTCCAATTATTCCCCATCGTCACTTCCTATTGGGAAAAAAGGAGAAAGTAGTGGAACTGGAAACTTAGTATCTATTTATAATTCAGACGTTCGAAACAACCAATCAAAGCCAGTTTCTCCCATGTCAGCCACTGCACTTCTACAGAAAGCGGCTCAGATGGGTTCAACCAGAAGCAGCAACCCTTCCATATTTAGCGGCAGTTTTGGAGTAATGAGCTCGTCTTCTTCCCAGACTACGGCAAGTCTCGAAAATAACGCGGACCAGAACCGTAACAACGAGCTAAACCAAGTGTATCAGAGTATGAAACAATCAGAGAATTTTAGTTCAAGTAGCAGTGGTGTCGGTACGATGGGGATGAGCAATAACTTCAGCTCAATGACGCATTCATCGAACAGTGGTCTTGATGAGCTCGTGTCGCAATCCCATGGAAGACAAAGTAACAAACAAGTGCAATTGAAGCTGCATCCTGATCATTCAAACACTGGGGAACATGGTTACACCAGAGATTTTCTGGGAGTGAGCGGAGCAGGAGGAGCTGGCTCCCCTTTCCTTCCCCAAGAGCTCGCTAAATTTGCTTCCATTGCCTCATCCATGGGAATGTCTCAGTTCCCGAGTAGTACTAGTAAATTAAGCTAG 1575 0.4654 MLSCDPFSLSSSIGGFPPEPNPNPNPKLNPPPLPKKKRNLPGTPDPDAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALTEEGTRLTSVGTSNLNFKNDESVMSSNSQLSSAHGFGISQFSANGFLSEFDGMGMSMVGGADQQMRPNLSLWLNQVGNNPRINNPLEVGPNSGLYVSSSSSSGLPEINMQMPQPNNTFSPSLSNYSPSSLPIGKKGESSGTGNLVSIYNSDVRNNQSKPVSPMSATALLQKAAQMGSTRSSNPSIFSGSFGVMSSSSSQTTASLENNADQNRNNELNQVYQSMKQSENFSSSSSGVGTMGMSNNFSSMTHSSNSGLDELVSQSHGRQSNKQVQLKLHPDHSNTGEHGYTRDFLGVSGAGGAGSPFLPQELAKFASIASSMGMSQFPSSTSKLS 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1264 524 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Lele07g1264 524 MobiDBLite consensus disorder prediction 17 39 - -
Lele07g1264 524 FunFam protein indeterminate-domain 12-like 43 111 - -
Lele07g1264 524 MobiDBLite consensus disorder prediction 414 469 - -
Lele07g1264 524 Pfam Zinc-finger double-stranded RNA-binding 64 86 IPR022755 -
Lele07g1264 524 MobiDBLite consensus disorder prediction 1 47 - -
Lele07g1264 524 Gene3D Classic Zinc Finger 43 116 - -
Lele07g1264 524 SUPERFAMILY beta-beta-alpha zinc fingers 63 160 IPR036236 -
Lele07g1264 524 FunFam protein indeterminate-domain 5, chloroplastic-like 118 197 - -
Lele07g1264 524 MobiDBLite consensus disorder prediction 304 330 - -
Lele07g1264 524 MobiDBLite consensus disorder prediction 414 480 - -
Lele07g1264 524 MobiDBLite consensus disorder prediction 1 16 - -
Lele07g1264 524 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Lele07g1264 524 SMART c2h2final6 64 86 IPR013087 -
Lele07g1264 524 SMART c2h2final6 140 160 IPR013087 -
Lele07g1264 524 SMART c2h2final6 105 135 IPR013087 -
Lele07g1264 524 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 26 499 IPR031140 -
Lele07g1264 524 Gene3D Classic Zinc Finger 118 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1264 Lele-ChrLele07 7656825 7658609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1264 1 246 IDZ Gene Family AT5G03150 65.934 2.65e-119 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele07g1264 zf-C2H2_jaz 7.7e-05 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g1264 07 7656825 7658609 Lele07g1264 07 7656825 7658609 ECH
Lele05g1217 05 7638372 7640164 Lele07g1264 07 7656825 7658609 hybridization
Lele06g1083 06 6757159 6758960 Lele07g1264 07 7656825 7658609 hybridization