Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1220 ATGCCTGATCCTTATGATTCCATGTACGAGGACGCCGAAGTTTTGGCGGCACAAATATTAGAAAGCGAAGAGGAATCTGCAGCCAGCGAAGAAGAGGAGGAGGAGGAGGAGGACGGGGACGGGGACGGGGATGAAGATGAGGCCGAAGAGTATATTCCGCTTATACAGTCTCCTAGGGCTTCGCGGGGCGTTCCTTCTACCTCCAATCAACGTGATACCATAGTTTACGAGGTTCTGGATGATTGTGTTGAAGAAGAGGTAAACAAACGGCGGAGGACTGAAGGAGGAGAAACGTGTTCGCCTTTGGAAATTGGGAGCGCCGACAGCAGTCAAGGAAATGAGTGGAACCGTGCTGACATTGATGGCTTGTATTGCCCCATTTGTATGGATGCCTGGACCAATGACGGTGAACACCACATCTGCTGTCTTCCGTGTGGGCACATATATGGCATGTCTTGCATCAAAAGGTGGCTTCAACAGCGAAAAAATTCTGGGAAGTGTCCACAATGCAACAGGAAATGTGCATTGAGGGATTTGAGGAAACTCTATGCTTCACGTGTACTTGCTGCTGATGAAGAGTCACGGAAGAAAATTCGGTCGCTTGAGGCCAGATGTGTTATTCTCGAAGGCAGGGGCTCTGACTGGTGCAAGAAAGAAGCAGCATGGAAGAAAAAAGAAGCTCAATGGGGTCTCGAAGTTAAGAAACTTACGGAGAGAAATACATATTTGGAGCAGCTAATACAAGATATGGAAAGGAGGCAAACTGGTACCATGGAGGCAATTGGGAATTGTCGATGGGGATCTGAATCAAAACATGGCTTTGGGGCAAAGATATATGGGAAAGGACATTGTTGCAATTTTGAATTGCAGAAAGAGTTTCAGCTGGGCAGTCCTCTTGTATTTGACGTAAATGCTTCTAATCAAATTTTATTAATAGCACAAAGGCCAAAAGGGATAGGTGGACCTTACTTGCTAACTAAAATGAGTTTAATACCTCCATATGAGATGGAAGATATCTTGCTTCCTTCTGCTTCATGTGCCATTAAAGATCTCCATATTTCTCCTTTGAATAGTGACCTGGCCCTTTATGCCTCATTAGGAAGGAAATTATCAGTACTCAGCATGGAGAGCAACAGTGTGGTTGTCAATTATGATCTGCAGGTTCCTGCTTGGTCATGTTCATGGGATCTCAGCAGTTCCCATTATGTATATGCTGGACTACAGAATGGTTCTGTCTTGGTATTTGATTTGCGCCAAACTGCTGGGCCCATGAAATCCCTGAATGGGTTGACTAGCAACCCCGTTCATACTGTACAGTCACTTGTACAAGATTCCAGTCTTTCTTCAGGTGTAGGAACAATTCTATCCGCTTCTGCCATTGGCCTGTGTCAGTGGAACATAGGTGCTGAAGAGGGGCCGTGTATGATTCCTGAAACTGGTAATCAAGGGGTTTGTATATCTCTTGCCTATTGCCCAAGTAGTAACGATGTTGTCACATCATACCGTCCCAAATTTGACATGTCCATTGATGGATCTCTCTCTCAACCATCTTTCACTCCTTCCCAAGTAATAGGACAAGGAGTCCAGGGCTCTCATGTCTTATTCAAGAGACTTGGTGGAAGCCACTTTCAACAGTTGGGTTCCTCATGTGCCAATGTAAGTAACATTCGACTTCCAAAATGTGTAATAATCGATATAGAGAGTGAGGGCCAATTGTTGGTATCCGTAGATGAATGTGCATGCGAATTGGTCTTGCAAGAGTTGCCATCTTTTGGGGTTGTTCAGCGTCTGAAATTACCAGAGCATGCTCGGGATCTGAAGTATTCACCTACTCTGAGTCATGGATTACTGGGTTGTTTAACTGGAAAGTCATTGCAACTTTTCTGTACCAAACTCTCGTGA 1902 0.4501 MPDPYDSMYEDAEVLAAQILESEEESAASEEEEEEEEDGDGDGDEDEAEEYIPLIQSPRASRGVPSTSNQRDTIVYEVLDDCVEEEVNKRRRTEGGETCSPLEIGSADSSQGNEWNRADIDGLYCPICMDAWTNDGEHHICCLPCGHIYGMSCIKRWLQQRKNSGKCPQCNRKCALRDLRKLYASRVLAADEESRKKIRSLEARCVILEGRGSDWCKKEAAWKKKEAQWGLEVKKLTERNTYLEQLIQDMERRQTGTMEAIGNCRWGSESKHGFGAKIYGKGHCCNFELQKEFQLGSPLVFDVNASNQILLIAQRPKGIGGPYLLTKMSLIPPYEMEDILLPSASCAIKDLHISPLNSDLALYASLGRKLSVLSMESNSVVVNYDLQVPAWSCSWDLSSSHYVYAGLQNGSVLVFDLRQTAGPMKSLNGLTSNPVHTVQSLVQDSSLSSGVGTILSASAIGLCQWNIGAEEGPCMIPETGNQGVCISLAYCPSSNDVVTSYRPKFDMSIDGSLSQPSFTPSQVIGQGVQGSHVLFKRLGGSHFQQLGSSCANVSNIRLPKCVIIDIESEGQLLVSVDECACELVLQELPSFGVVQRLKLPEHARDLKYSPTLSHGLLGCLTGKSLQLFCTKLS 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1220 633 MobiDBLite consensus disorder prediction 89 113 - -
Lele07g1220 633 Pfam Ring finger domain 124 171 IPR001841 -
Lele07g1220 633 MobiDBLite consensus disorder prediction 19 69 - -
Lele07g1220 633 CDD mRING-C3HGC3_RFWD3 121 171 - -
Lele07g1220 633 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 204 IPR013083 -
Lele07g1220 633 ProSiteProfiles Zinc finger RING-type profile. 125 171 IPR001841 -
Lele07g1220 633 SMART ring_2 125 170 IPR001841 -
Lele07g1220 633 Coils Coil 12 37 - -
Lele07g1220 633 Gene3D - 337 511 IPR015943 GO:0005515
Lele07g1220 633 Coils Coil 233 253 - -
Lele07g1220 633 PANTHER RFWD3 PROTEIN 22 631 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Lele07g1220 633 MobiDBLite consensus disorder prediction 24 51 - -
Lele07g1220 633 SUPERFAMILY WD40 repeat-like 345 500 IPR036322 GO:0005515
Lele07g1220 633 SUPERFAMILY RING/U-box 117 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1220 Lele-ChrLele07 7387573 7391662 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1220 124 179 C3H Transcription Factor Family AT1G51930 40.351 2.68e-07 48.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g1220 07 7387573 7391662 Lele07g1220 07 7387573 7391662 ECH
Lele05g1176 05 7369179 7373245 Lele07g1220 07 7387573 7391662 hybridization