Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1213 ATGTTACGTAAAGGGCCTTGGCTCCACGAAGAAGACGAGAAACTCACAACCTTCGTTACTTGTCTGGGAGAACGAAGATGGGATTCCCTTGCCAAAGTAGCTGGACTCAGGAGAAGTGGTAAGAGTTGCAGGTTGAGGTGGATGAACTATCTTCGTCCAAATCTAAAGCATGGCCCTTTTAGTGTTGAAGAAGAGCAACTCATTATTCAACTTCACCAGCTATGGGGTAACAAGTGGTCAAAGATTGCGCGCAGTCTACCTGGAAGAACTGACAGCGAAGTCAAGAATTATTGGAGAACTCATTTCAGAAAGAAAGCACGACTGGAACAACAAGAATGGGAAATGACTAGTTCACCGTACGAGATTCGATTACCAGATTGGATAATAGAACTGCAAAAAGATGAGAATGAAACAGAATATGAACATCATAGTAATATCACAGAGTCCACTGAATCTTATACTTATTCAGGTTCCATCTGGGACATGAGTTGA 492 0.4228 MLRKGPWLHEEDEKLTTFVTCLGERRWDSLAKVAGLRRSGKSCRLRWMNYLRPNLKHGPFSVEEEQLIIQLHQLWGNKWSKIARSLPGRTDSEVKNYWRTHFRKKARLEQQEWEMTSSPYEIRLPDWIIELQKDENETEYEHHSNITESTESYTYSGSIWDMS 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1213 163 SUPERFAMILY Homeodomain-like 3 98 IPR009057 -
Lele07g1213 163 Pfam Myb-like DNA-binding domain 4 51 IPR001005 -
Lele07g1213 163 Pfam Myb-like DNA-binding domain 58 101 IPR001005 -
Lele07g1213 163 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 2 133 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lele07g1213 163 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 52 106 IPR017930 -
Lele07g1213 163 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 51 IPR017930 -
Lele07g1213 163 CDD SANT 6 51 IPR001005 -
Lele07g1213 163 SMART sant 3 53 IPR001005 -
Lele07g1213 163 SMART sant 56 104 IPR001005 -
Lele07g1213 163 CDD SANT 59 102 IPR001005 -
Lele07g1213 163 Gene3D - 58 121 - -
Lele07g1213 163 ProSiteProfiles Myb-like domain profile. 1 51 IPR001005 -
Lele07g1213 163 Gene3D - 4 56 - -
Lele07g1213 163 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
Lele07g1213 163 FunFam Myb transcription factor 4 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1213 Lele-ChrLele07 7346071 7347029 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1213 3 107 MYB Transcription Factor Family AT5G59780 64.762 6.75e-48 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele07g1213 Myb_DNA-binding 1.2e-11 CL0123