Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele07g1211 | ATGATGAAAAGAGGAGTGACGGGAGGAAAGGTCAGAAGAGGAGCTATCGAGGATTACACGTGTCAAACTATTATAGGTGACGTTGTGAGACAAGCATACCATGAACTGTACGGCGACTATGGGAAAGGTTTTCCCGACCCCTCATGCTCCCATAATTTGCCACGTCCCCATGTGGGGATTCAACGGGAAGCAAGAGCAGAATCTGGAACGATGGAGTGCCTCGTGGAGCCTCAGATGTCAGCCCAGGAAATTTCTCAACCAGATGACGGCTCTCGTTCTGAGATGGGATATGGCAGCTACGGGTGCTCACACTATAGAAGGAGATGCAAGATAATAGCACCTTGTTGCAATGAAATATTCGACTGCAGACATTGCCATAATGAATCTAAGAATTCGATTGAACTGGACCCTGTTGATCGCCATGACGTTCCTCGTCACAATTTAAAGAGGGTTATCTGTTCCTTGTGTAGAACTGAGCAAGACGTTCAACAGATGTGCATTCAGTGCGGTGTTTGCATGGGGAAGTACTTCTGCTCCAAGTGCAAGTTTTTTGATGATGATGTATCAAAGAATCAGTACCATTGCAATGAATGTGGTATCTGCAGAATTGGAGGCGAGGAGAATTTTTTCCACTGCAACAAATGCGGATGTTGCTATTCAACATTGTTGAAGGACTCACACCGTTGCGTTGAAAAAGCTATGCATCACAATTGTCCTGTTTGCTTTGAGTTTCTTTTTGATACCACAAAAGACATTACTGTAATGCCATGTGGTCACTCTATCCATCTGGAATGTGTGAGAGAAATGGAGCAACATTTCCAGTATTCTTGTCCTGTTTGCTCAAAATCTTTTTGTGATATGTCGCGTGTGTGGGAGAGACTGGATCATGAGGTTGCATCAACACCTATGCCAGAAATATATCAAAATAAGATGGTCTGGATTCTGTGCAATGATTGTGGGGAAACATCAGAGGTGAGCTTTCACGTTTTGGCGCACAAGTGTATAAGATGCAAATCATACAACACCAGACTGACGCGAGGTGGACCTGCTTCATCATGCTCATCCAACATTGAAGAGCTGCTGCAATGA | 1089 | 0.4435 | MMKRGVTGGKVRRGAIEDYTCQTIIGDVVRQAYHELYGDYGKGFPDPSCSHNLPRPHVGIQREARAESGTMECLVEPQMSAQEISQPDDGSRSEMGYGSYGCSHYRRRCKIIAPCCNEIFDCRHCHNESKNSIELDPVDRHDVPRHNLKRVICSLCRTEQDVQQMCIQCGVCMGKYFCSKCKFFDDDVSKNQYHCNECGICRIGGEENFFHCNKCGCCYSTLLKDSHRCVEKAMHHNCPVCFEFLFDTTKDITVMPCGHSIHLECVREMEQHFQYSCPVCSKSFCDMSRVWERLDHEVASTPMPEIYQNKMVWILCNDCGETSEVSFHVLAHKCIRCKSYNTRLTRGGPASSCSSNIEELLQ | 362 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele07g1211 | 362 | ProSiteProfiles | Zinc finger CTCHY-type profile. | 173 | 237 | IPR017921 | - | |
| Lele07g1211 | 362 | PANTHER | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 | 77 | 346 | - | - | |
| Lele07g1211 | 362 | Gene3D | - | 309 | 349 | - | - | |
| Lele07g1211 | 362 | ProSiteProfiles | Zinc finger RING-type profile. | 238 | 281 | IPR001841 | - | |
| Lele07g1211 | 362 | Pfam | Zinc-ribbon | 285 | 343 | IPR039512 | - | |
| Lele07g1211 | 362 | SUPERFAMILY | CHY zinc finger-like | 99 | 173 | IPR037274 | GO:0008270 | |
| Lele07g1211 | 362 | Pfam | Ring finger domain | 237 | 280 | IPR001841 | - | |
| Lele07g1211 | 362 | SUPERFAMILY | Zinc hairpin stack | 174 | 231 | IPR037275 | - | |
| Lele07g1211 | 362 | SUPERFAMILY | RING/U-box | 237 | 287 | - | - | |
| Lele07g1211 | 362 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 231 | 283 | IPR013083 | - | |
| Lele07g1211 | 362 | ProSiteProfiles | Zinc finger CHY-type profile. | 95 | 171 | IPR008913 | GO:0008270 | |
| Lele07g1211 | 362 | SMART | ring_2 | 238 | 280 | IPR001841 | - | |
| Lele07g1211 | 362 | Pfam | CHY zinc finger | 102 | 183 | IPR008913 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele07g1211 | Lele-ChrLele07 | 7330482 | 7334337 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele07g1211 | 100 | 347 | C2H2 Transcription Factor Family | AT3G18290 | 40.157 | 3.40e-53 | 187 |