Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1207 ATGGAGGTCACAGGCCAGGAACTTGTGGTGTGGAATAAGGATCATCAAGCCCAGGTCATGAAGGGCAAGCGCACCAAGCGTTCCAGGCTACCCTCTCCACTCAGGCTATCCATGGCTTCTTCTTCTTCTAGCGCCGGCAGAACCAACACCGACGATAATTCCGGCGGGTCATCATCAGTAGTAGATATGGCTACGACCTCGACTGATCATCAATTGAGGGTGACCAGCGAAGAAGAGGACATGGCTAACTGTTTGATCCTTCTGGCTCAAGGCCATGACCGTGACAAGCCCTCTTCCCACAACAACAACGATAAGGCTTCCTCTGGGCTGTACGTTTATCAGTGCAAGACCTGTGATCGATGCTTCCCTTCGTTCCAAGCCCTCGGTGGACACAGGGCCAGCCACAAGAAACCAAAGCCAAACAATAATTCTGAAGAAAAGCTGCAATCAGTTGCATTTAAGAACCAAGAGGCTCATGAACCCTATGACCCCACCGACACAAGCTTCGTCCTCTCGTTGCAGATATCGAATAGGGTTTCGTATAACAGCAATAGTAACAGTAATAAGTCGAAAGTTCACGGGTGTTCTATATGTGGGGCTGGTTTCACATCTGGGCAAGCTTTGGGGGGTCATATGAGGCGCCACAGAACATTGGCGAACAACTCTGCAACTTGTACGACGAGGAGCACGGGGAATAATAATTCTGAACTCCAGCAAGCCAACAAGCCCAAGAATGTTTTCAAGTTGGATTTGAATCTTCCCGCACCGGAAGATGATCACAGAGAATCCAAGTTGCCGTTTCAGACTCAAGACAATGTTCTTGTTTTCTCTGCATCTTCTTTGGTGGATTGCCATTATTGA 861 0.4866 MEVTGQELVVWNKDHQAQVMKGKRTKRSRLPSPLRLSMASSSSSAGRTNTDDNSGGSSSVVDMATTSTDHQLRVTSEEEDMANCLILLAQGHDRDKPSSHNNNDKASSGLYVYQCKTCDRCFPSFQALGGHRASHKKPKPNNNSEEKLQSVAFKNQEAHEPYDPTDTSFVLSLQISNRVSYNSNSNSNKSKVHGCSICGAGFTSGQALGGHMRRHRTLANNSATCTTRSTGNNNSELQQANKPKNVFKLDLNLPAPEDDHRESKLPFQTQDNVLVFSASSLVDCHY 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1207 286 Pfam C2H2-type zinc finger 112 138 - -
Lele07g1207 286 Pfam C2H2-type zinc finger 192 216 - -
Lele07g1207 286 PANTHER ZINC FINGER PROTEIN ZAT5 65 264 - -
Lele07g1207 286 ProSitePatterns Zinc finger C2H2 type domain signature. 195 215 IPR013087 -
Lele07g1207 286 Gene3D Classic Zinc Finger 110 215 - -
Lele07g1207 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 140 IPR013087 -
Lele07g1207 286 MobiDBLite consensus disorder prediction 18 68 - -
Lele07g1207 286 MobiDBLite consensus disorder prediction 34 68 - -
Lele07g1207 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 193 215 IPR013087 -
Lele07g1207 286 SMART c2h2final6 113 135 IPR013087 -
Lele07g1207 286 SMART c2h2final6 193 215 IPR013087 -
Lele07g1207 286 ProSitePatterns Zinc finger C2H2 type domain signature. 115 135 IPR013087 -
Lele07g1207 286 SUPERFAMILY beta-beta-alpha zinc fingers 112 215 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1207 Lele-ChrLele07 7311995 7312855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1207 19 286 C2H2 Transcription Factor Family AT5G03510 42.282 6.78e-58 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele07g1207 zf-C2H2_6 5.7e-10 CL0361