Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele07g1202 | ATGCGCAATCATCTGGGGAGCTATGAGTGCAAGCTTTGTCTCACCCTACACAATAACGAGGGCAATTACTTGGCCCACACACAGGGTAAGCGGCATCAGACTAATCTGGCAAAGAGAGCAGCACGTGAGGCCAAAGAGGCACCTGCTCAGCCTCAGCCCCACAAGCGTAAAGTCTCAGTTCGCAAGACAGTCAAGATTGGTCGGCCTGGGTACCGTGTGACTAAGCAATTTGATCCCGAGACAAAGCAGAGATCTCTTCTTTTCCAGATTGAATATCCTGAGATTGAAGAACTCACAAAGCCAAGGCATAGATTCATGTCTTCTTATGAGCAGAGGGTTCAATCCTTCGACAAAAGATACCAGTATCTCTTGTTTGCAGCTGAACCGTATGAGATAATTGCTTTCAAGGTTCCTAGCACAGAGATTGACAAGTCCACACCAAAGTTTTTCTCACATTGGGACTCAGACTCAAAAATGTTCACGTTGCAGTTGTATTTCAAACCCAAGCCACCAGAGGCAAACAAACCACAGCCTCCCTCTACAGCCAATGACACAGCAGCACCTGGTGTACCGCCAAGGCCTGCGCTGCCACCACCTCCTCCACCACAAGGACTACCTCCTGGTGCAGCTGTTGGAAATCCTCCTAGAGCCCCTCCGCCTCCAATGCCTGGATCATTGCCGCCTCCTCCTCCTCCTATGTCAAATGGACCTACACCTGCACCTCCTGGCGGAATGCCACCTCAGCCCCCTGTTAGCGGCTCAGCATCTAGTTTCAACATGGGTTCTAGGCCCCCATCAATGCCACCTCCCCAAAATTATTTGGCCCAACAAATGCAAGGCCAGGGTGGTCGTCCACCTCCACCACCTCCTAGCATGTGA | 879 | 0.5119 | MRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEELTKPRHRFMSSYEQRVQSFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDSDSKMFTLQLYFKPKPPEANKPQPPSTANDTAAPGVPPRPALPPPPPPQGLPPGAAVGNPPRAPPPPMPGSLPPPPPPMSNGPTPAPPGGMPPQPPVSGSASSFNMGSRPPSMPPPQNYLAQQMQGQGGRPPPPPPSM | 292 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele07g1202 | 292 | FunFam | Splicing factor 3a subunit 2 | 50 | 174 | - | - | |
| Lele07g1202 | 292 | MobiDBLite | consensus disorder prediction | 190 | 249 | - | - | |
| Lele07g1202 | 292 | MobiDBLite | consensus disorder prediction | 168 | 292 | - | - | |
| Lele07g1202 | 292 | SMART | ZnF_U1_5 | 5 | 39 | IPR003604 | GO:0003676|GO:0008270 | |
| Lele07g1202 | 292 | MobiDBLite | consensus disorder prediction | 40 | 60 | - | - | |
| Lele07g1202 | 292 | Pfam | Zinc-finger of C2H2 type | 8 | 32 | - | - | |
| Lele07g1202 | 292 | Gene3D | - | 49 | 174 | - | - | |
| Lele07g1202 | 292 | Pfam | Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) | 66 | 160 | IPR031781 | - | |
| Lele07g1202 | 292 | PANTHER | SPLICING FACTOR 3A SUBUNIT 2 | 1 | 291 | - | - | |
| Lele07g1202 | 292 | ProSiteProfiles | Zinc finger matrin-type profile. | 8 | 38 | IPR000690 | GO:0003676|GO:0005634|GO:0008270 | |
| Lele07g1202 | 292 | Gene3D | Classic Zinc Finger | 3 | 45 | - | - | |
| Lele07g1202 | 292 | SUPERFAMILY | beta-beta-alpha zinc fingers | 6 | 39 | IPR036236 | - | |
| Lele07g1202 | 292 | SMART | CactinC_cactus_3 | 45 | 173 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele07g1202 | Lele-ChrLele07 | 7292481 | 7295631 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele07g1202 | 1 | 253 | C2H2 Transcription Factor Family | AT2G32600 | 70.356 | 3.26e-110 | 318 |