Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1193 ATGGGCAAATCTCAGACTTTGTTTGATTTGCTCGCTAGTGCTTTTGCTTTATATTCTCCACTATCTCGTATGGTTTTCATAGTAATTACAAAATTCTTAGCTTGCCGTTGGCTGATCGATCCTACACCAGTGATTGGTCAATCACAAGTCAAAGCGGGTCCAGATGGGGTTTCAGTAGTTTATATGGGCGGCAAGGCTTCTGGCCTGCGGGGTGTTATTACAGATGGAGGGATCTTGTGCTCTTGTTGTCTGTGCAATGGGCGCAAGGTTATTCCACCTTCCCAATTCGAAATTCATGCTTGCAAATCATATAGGCGAGCAGCACAGTATATTTGCTTTGAAAACGGAAAGAGCCTGCTTGAATTATTGAGAGCATGCAGGGGAACTCCGCTGCTTACATTGGAGACGACAATTCAAAATTTTGTGTGTTCTCCACCTCAAGAGAAATATTTTACATGTAAAAGGTGCAAAGGATGTTTTCCTTCTTCACAAGTGGACAAAGTAGGGCCTATATGTAAAACTTGTGTGGAATCAAAGGAATCTGAAGCCAGTTTAATTGACGCGGTTGGCAAAAGAGTCCGGTCTCCCAGATTGGTTCCAGCCTCCCAACCGTTAAGTGATTCTGAGCTGTGCAACTCATCACAAATTAGCAGACATTGGAAGAAAAGAACAAGGACAACAAATCAGGTTAGCAGCTCAAAGTCTTCTGAGACTGCTTCTGTGCCTATCCAATCACGAAAGAAGTCTATGCAGAAGTTGAACAAGTTCGTATCTGGGTCAACAAAAGTTTCAGTAAAACTGGAGACCCCGCTAATTTCATCAGACTCAAAGTGTTTATCTTCACAAAATAAGAGTCAATGGAAGATCACTAAAAAGGATCAGCGGTTACATAAATTAGTTTTTGAAGAAGGTGGATTGCCTGATGGAACAGAGGTAGCTTATTATGGACGTGGACAGAAATTGCTTGAGGGTTACAAAAAGGGATTTGGGATACTTTGTCGGTGCTGCAACACAGAGGTCAGCCCATCACAATTTGAGGTTCATGCAGGCTGGGCTTCTCGCAGGAAACCTTATGCATACATCTACACTTCAAATGGGGTGTCTCTCCATGAATTAGCAATTTCTCTTTCAAAAGGCCGCAAGTACTCTGCAAAGGACAATGATGATGTTTGCATTATTTGTTTGGATGGTGGAAATCTGTTGCTTTGTGATGGATGCCCAAGGGCATTTCATAAAGAATGCGCATCTCTATCAAGCATTCCACGCGGTGCCTGGTACTGTAAGTTTTGCCAAAACATGTTCCAGAGGGAAAGATTTGTAGCACACAATGCCAATGCTGTGGCTGCTGGAAGGGTTGACGGGGTTGATCCTATTGAACAGATAACCAAGAGATGCATTCGCATTGTCAAAGGCATTGAAGCTGAGCTGAGCGGCTGTGCTTTATGCAGGGGTTATGACTTCAGCAAGTCAGGGTTTGGTCCTCGCACAATTATACTCTGTGACCAGTGTGAAAAGGAATATCATGTAGGCTGTTTGAGGGATCATAAGATGGCATATTTGAAGGAATTGCCAGAAGGAAATTGGTTTTGTTGCACGGATTGCAACAGAATACATTCTACTTTGCAGAAGTTCTTGGTTAGGGGGGCTGAGAAACTTCCTGACTCTCTCGTGGATGTTTTAAAGACAAAGCAAGAGGAAAAAGGTTTGCAGTCTTTCAATGATATTGATGTAAGATGGAGACTTCTTAATGGCAAAATTGCTTCTCCTGAAGCCAGGCCATTGCTGTCAGAGGCTGTTTCAATCTTTCATGAATGCTTTGATCCTATAGTTGATTCAACTAGTGGACGTGACCTTATCCCAGCCATGGTTTTTGGAAGGAATGTGCGGAGTCAAGAGTTTGGAGGAATGTATTGTGCAATATTATCGGTCAATTCAACTGTTGTATCAGCTGGCATGCTTCGAATTTTTGGTAAAGATGTGGCTGAACTTCCTTTGGTTGCAACAAGCAGTGATAATCATGGGAAGGGCTACTTCCAATTACTCTTCACTTGCATTCAGAGACTGCTGGCAATGTTGAATGTAAAGATGCTTGTGCTACCAGCTGCTGAAGAAGCAGAATCCATATGGACAGATAAATTTGGGTTCCGAAAGATGAAACCAGAGCAGATTAGCAACTGTAGAAAGAACTACAGTCAGATGGTGACATTCCAAGGGACATCCATGCTTCAAAAAATGGTTCCGCCTCAATTCTTCAATGTGGAAGAGGAAAACTCCTAG 2277 0.4273 MGKSQTLFDLLASAFALYSPLSRMVFIVITKFLACRWLIDPTPVIGQSQVKAGPDGVSVVYMGGKASGLRGVITDGGILCSCCLCNGRKVIPPSQFEIHACKSYRRAAQYICFENGKSLLELLRACRGTPLLTLETTIQNFVCSPPQEKYFTCKRCKGCFPSSQVDKVGPICKTCVESKESEASLIDAVGKRVRSPRLVPASQPLSDSELCNSSQISRHWKKRTRTTNQVSSSKSSETASVPIQSRKKSMQKLNKFVSGSTKVSVKLETPLISSDSKCLSSQNKSQWKITKKDQRLHKLVFEEGGLPDGTEVAYYGRGQKLLEGYKKGFGILCRCCNTEVSPSQFEVHAGWASRRKPYAYIYTSNGVSLHELAISLSKGRKYSAKDNDDVCIICLDGGNLLLCDGCPRAFHKECASLSSIPRGAWYCKFCQNMFQRERFVAHNANAVAAGRVDGVDPIEQITKRCIRIVKGIEAELSGCALCRGYDFSKSGFGPRTIILCDQCEKEYHVGCLRDHKMAYLKELPEGNWFCCTDCNRIHSTLQKFLVRGAEKLPDSLVDVLKTKQEEKGLQSFNDIDVRWRLLNGKIASPEARPLLSEAVSIFHECFDPIVDSTSGRDLIPAMVFGRNVRSQEFGGMYCAILSVNSTVVSAGMLRIFGKDVAELPLVATSSDNHGKGYFQLLFTCIQRLLAMLNVKMLVLPAAEEAESIWTDKFGFRKMKPEQISNCRKNYSQMVTFQGTSMLQKMVPPQFFNVEEENS 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1193 758 PANTHER AUTOIMMUNE REGULATOR 55 745 - -
Lele07g1193 758 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 475 537 IPR013083 -
Lele07g1193 758 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 377 454 - -
Lele07g1193 758 Pfam Tify domain binding domain 324 374 IPR032308 -
Lele07g1193 758 Pfam Tify domain binding domain 71 126 IPR032308 -
Lele07g1193 758 ProSiteProfiles Zinc finger PHD-type profile. 388 433 IPR019787 -
Lele07g1193 758 SUPERFAMILY FYVE/PHD zinc finger 379 435 IPR011011 -
Lele07g1193 758 SMART PHD_3 390 431 IPR001965 -
Lele07g1193 758 SMART PHD_3 478 535 IPR001965 -
Lele07g1193 758 MobiDBLite consensus disorder prediction 226 246 - -
Lele07g1193 758 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 634 720 IPR016181 -
Lele07g1193 758 Gene3D - 583 746 - -
Lele07g1193 758 ProSitePatterns Zinc finger PHD-type signature. 391 430 IPR019786 -
Lele07g1193 758 SUPERFAMILY FYVE/PHD zinc finger 473 534 IPR011011 -
Lele07g1193 758 MobiDBLite consensus disorder prediction 221 246 - -
Lele07g1193 758 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 377 459 IPR013083 -
Lele07g1193 758 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 475 537 - -
Lele07g1193 758 Pfam PHD-finger 391 432 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1193 Lele-ChrLele07 7200312 7214440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1193 55 746 PHD Transcription Factor Family AT2G36720 55.977 0.0 798
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele07g1193 TDBD 4.4e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1151 05 7210276 7219068 Lele07g1193 07 7200312 7214440 hybridization
Lele06g1011 06 6270076 6277317 Lele07g1193 07 7200312 7214440 hybridization