Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1181 ATGTATAGAACCCGTTGCGTCTCTTTGTTTCCCTCCTTTCCCAGAAACACAATTATTCTAGCTTCTATAATCAATTTTGTTCCTGGCAACTCATGTTACATTGGGACCCTTGCATGTACGCGCTTTGATTTGAAATTTGCAACTAAGTGGCTATCGAGCGTACCAAGATTGAAAAGGACAGAAAATGAACCGTTCATTAAAATCAGCATGAATACGGGTCGAAATGACAGCGAAAAGAAGATGGAGGTTTCGTATCTAACTTTCGAAGAAATAAAAACACGTCTCCGAGTAATGCCGCAACTTCGCGTTCCCTCCGAAACCCCTTCCATCCCTTCGCTTAAAACCGCATATTGTGCTATGGCGGAATCCGTTTCTTCTGGTGAATCCTCCAACAACACTCCGCCGCCGGTTCCGGCACCAGCGCCTGATCGCAAAAGTTGGGCTGACGAGGCGGAAGAAGAAGTTCCACAAGAAACTAGTGGAGACACTGCGAGTTCGTCGACAGTCTCGTTGCTTAACGTTGATGAATTAACAATCGACGAGAAAAAGAGGAGTCCTAAGGTTCTGGACGAACCCGATGATTCCAATATCCAAGCGGTTACATCGGGCGATACTCCGTATACTTCAGCGAGTACTTTTGAAGATTTAAATCTAACCCCAGAGTTGCTAAAGGGATTGTATGTTGAGATGAAATTCCAGAAACCTAGCAAGATTCAAGCTATCAGTTTGCCTATGATTTTGAACCCTCCTCACAAGGATTTGATCGCTCAGGCACATAATGGATCTGGCAAGACAACTTGTTTTGTGCTTGGGATGCTGAGTCGTGTTGATCCTACGGTGGAAGCCCCTCAGGCCCTTTGCATTTGTCCAACAAGAGAATTGGCTATTCAGAATATGGAAGTTCTTCGAAAGATGGGGAGGTACACTGGGATTAGTTCTGAATGTGCCATTTCCATGGACAGCAGAGATTATATTCCAATATCAAAACGACCACCCGTAATGGCGCAAGTAGTGATTGGGACTCCTGGCACGATTAAGAAATGGATGTCAAATAAGAAGCTGGGTGTGAGCAGATTAAGAATTTTAGTTTTTGACGAGGCTGATCAAATGCTTGCTGAGGATGGTTTTAAAGATGATTCCTTGAGGATAATGAAGGAAATAGAAAAATTCAATCTGCATTGTCAGGTTCTTCTTTTTTCGGCTACCTTTAATGACACTGTCAAGAATTTTGTTTCAAGGGTAGTTAAGAAGGATCATAATCAACTTTTTGTGAAGAAAGAAGAACTGTCTTTACAGGCAGTGAAGCAATACAAGGTGAACTGTCCTGATGAGCTCTCTAAGATTAATGTGATCAGAGATTACATATTTGAGATAGGAGAGAATGTTGGGCAAACTATTGTATTTGTGCGCACAAGAAACAGTGCAAGTATGTTGCATAAATCACTTGCTGATTTGGGTTATGAGGTTACTTCCATACAAGGTGCTCTTGACAATGTTGAGAGAGACAAGATTGTTAAGGAGTTCAGGGATGGTTTGACTCAAGTTCTTATATCTACTGATGTTCTAGCGCGAGGTTTTGATCAGAAACAGGTGAATTTGGTTATCAATTACGATCTCCCTGTGAAACATAATGCTCAGTATACCCGTGAGCCAGAGCCTGATTATGAGGTATATTTGCACAGGGTTGGTAGGGCTGGACGTTTCGGGCGCAAGGGTGCTGTATTTAACTTGATATGTGATGAAAGGGATGAAAAACTGATGGAAAAAATTGAGAAACATTTTGGCACCCGTGTAACTGAGGTCCAACAAAGAAATGTTGATGATTATAAACGCGCTCTTAAGGAGGCTGGTTTACTGCAATAA 1863 0.4219 MYRTRCVSLFPSFPRNTIILASIINFVPGNSCYIGTLACTRFDLKFATKWLSSVPRLKRTENEPFIKISMNTGRNDSEKKMEVSYLTFEEIKTRLRVMPQLRVPSETPSIPSLKTAYCAMAESVSSGESSNNTPPPVPAPAPDRKSWADEAEEEVPQETSGDTASSSTVSLLNVDELTIDEKKRSPKVLDEPDDSNIQAVTSGDTPYTSASTFEDLNLTPELLKGLYVEMKFQKPSKIQAISLPMILNPPHKDLIAQAHNGSGKTTCFVLGMLSRVDPTVEAPQALCICPTRELAIQNMEVLRKMGRYTGISSECAISMDSRDYIPISKRPPVMAQVVIGTPGTIKKWMSNKKLGVSRLRILVFDEADQMLAEDGFKDDSLRIMKEIEKFNLHCQVLLFSATFNDTVKNFVSRVVKKDHNQLFVKKEELSLQAVKQYKVNCPDELSKINVIRDYIFEIGENVGQTIVFVRTRNSASMLHKSLADLGYEVTSIQGALDNVERDKIVKEFRDGLTQVLISTDVLARGFDQKQVNLVINYDLPVKHNAQYTREPEPDYEVYLHRVGRAGRFGRKGAVFNLICDERDEKLMEKIEKHFGTRVTEVQQRNVDDYKRALKEAGLLQ 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1181 620 Gene3D - 428 617 IPR027417 -
Lele07g1181 620 MobiDBLite consensus disorder prediction 124 211 - -
Lele07g1181 620 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 283 587 IPR027417 -
Lele07g1181 620 Pfam DEAD/DEAH box helicase 237 409 IPR011545 GO:0003676|GO:0005524
Lele07g1181 620 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 171 590 - -
Lele07g1181 620 SMART ultradead3 231 437 IPR014001 -
Lele07g1181 620 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 245 421 IPR014001 -
Lele07g1181 620 MobiDBLite consensus disorder prediction 195 211 - -
Lele07g1181 620 Gene3D - 190 427 IPR027417 -
Lele07g1181 620 MobiDBLite consensus disorder prediction 158 174 - -
Lele07g1181 620 Pfam Helicase conserved C-terminal domain 447 569 IPR001650 -
Lele07g1181 620 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 450 617 IPR001650 -
Lele07g1181 620 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 211 240 IPR014014 GO:0003724
Lele07g1181 620 SMART helicmild6 476 569 IPR001650 -
Lele07g1181 620 CDD SF2_C_DEAD 434 578 - -
Lele07g1181 620 MobiDBLite consensus disorder prediction 176 191 - -
Lele07g1181 620 CDD DEADc_DDX19_DDX25 218 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1181 Lele-ChrLele07 7129690 7136475 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1181 204 601 Eukaryotic Initiation Factors Gene Family AT1G72730 34.963 1.31e-66 222