Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1180 ATGCGGAGTTTTCTTCCTATGTTATTATTGGCTTTCGCCGCCATTTTTGTGCCTGTATCAGTAGTTCACGGTGGGTTGTCTGGGGGTTTCCTCCCTCTGGAACGGGCAATGCCTCTTAGTCGGCGAGTGGAGCTGGAAGCACTCAGAGCTCGCGACCGAGCTCGGCATGCTAGAATATTGCAAGGTGTAGCAGGTGTTGTTGTCGACTTCTCAGTCAAAGGGCTGTCTGATCCTTCTACTATTGGGCTGTATTATACAAAAGTGAAGCTGGGCTCTCCTCCAAGAGAATTCAACGTCCAGATTGATACCGGAAGCGACATATTGTGGGTTAATTGCAACACTTGCGGCGATTGCCCTCAATCTAGTGAGTTGGAGATTCAGCTCAACTTCTTTGATACAGCCAGCTCTTCCACATCTGCGCTGATTTCCTGCTCAAATCCAATATGCTTTTCTTCAACTCCAAGTGCCGCAACTGAATGCACCCCTCAGATTAATCAGTGCAGCTACACCTTTCAGTATGGAGATGGAAGTGGGACATCAGGGTATTATGTTTCTGATGCGATGTATTTTGATACGATCCTTGGGCAGTCTATGCTGGCTAATTCTTCAGCTAAAGTTGTTTTTGGGTGTAGTACCTATCAGTCTGGAGATTTGACTAAGTCAGATAAAGCAGTGGATGGAATTTTTGGGTTTGGCCCTGGTGCTATATCCGTTATTTCACAATTATCATCACGAGGCATGACCCCCAAAGTATTTTCTCATTGTTTAAAAGGAGATGGTAACGGAGGAGGCATACTAGTTCTTGGTGAGATTTTGGAGCCAAGTCTTGTTTATAGTCCACTTGTCCCGTCAGAGCCTCATTACAACTTAAATCTTCAGAGTATTGGTGTTAATGGACGAATTCTCCCTATTAATCCAGCAGTTTTTGCAACATCTAACAACCGAGGAACTATAGTTGATACGGGTACAACCTTGTCATACCTTGTTCAAGAAGCATATGATCCATTGGTCAATGCTATAACTACCATTGTTTCACAGTCTGCCACTCCCATTATTTCAAAAGGAAGCCAGTGTTATTTGGCCTCAGCCAGTGTAGGTGATATATTTCCTTCAGTCAGTTTGATCTTTGCTGGTGGAGCATCCATGGTTTTAGAACCAGAACAGTACCTCTTACATTCTGATTTCATTGATGGTGTTCCAGAGTGGTGTATTGGTTTCCAGAAAGTGCAGGAGGGAGTTTCAATTTTAGGAGATCTTGTCCTAAAAGATAAGATATTTGTCTACGACTTAGCTCATCAACGGATTGGATGGGCTAACTATGATTGTTCTCTGTCTGTGAATGTCTCTGTGACCACAACCAAGGATGAGTACGTTAGTGCGGGACAGGTGAGTGTGAGCAGTTCAGAGCCAGACATTCTCGCCAAGTTGCTGCCTTTAAGCATTGCAGCTTTCTTTATGCACATAGCAGTTTTCTGGGGTTCCCAATTTTTGTGA 1494 0.4404 MRSFLPMLLLAFAAIFVPVSVVHGGLSGGFLPLERAMPLSRRVELEALRARDRARHARILQGVAGVVVDFSVKGLSDPSTIGLYYTKVKLGSPPREFNVQIDTGSDILWVNCNTCGDCPQSSELEIQLNFFDTASSSTSALISCSNPICFSSTPSAATECTPQINQCSYTFQYGDGSGTSGYYVSDAMYFDTILGQSMLANSSAKVVFGCSTYQSGDLTKSDKAVDGIFGFGPGAISVISQLSSRGMTPKVFSHCLKGDGNGGGILVLGEILEPSLVYSPLVPSEPHYNLNLQSIGVNGRILPINPAVFATSNNRGTIVDTGTTLSYLVQEAYDPLVNAITTIVSQSATPIISKGSQCYLASASVGDIFPSVSLIFAGGASMVLEPEQYLLHSDFIDGVPEWCIGFQKVQEGVSILGDLVLKDKIFVYDLAHQRIGWANYDCSLSVNVSVTTTKDEYVSAGQVSVSSSEPDILAKLLPLSIAAFFMHIAVFWGSQFL 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1180 497 Gene3D Acid Proteases 271 449 IPR021109 -
Lele07g1180 497 SUPERFAMILY Acid proteases 82 445 IPR021109 -
Lele07g1180 497 Pfam Xylanase inhibitor N-terminal 84 269 IPR032861 -
Lele07g1180 497 Pfam Xylanase inhibitor C-terminal 287 438 IPR032799 -
Lele07g1180 497 FunFam Aspartic proteinase-like protein 2 67 270 - -
Lele07g1180 497 ProSiteProfiles Peptidase family A1 domain profile. 84 438 IPR033121 -
Lele07g1180 497 PRINTS Pepsin (A1) aspartic protease family signature 90 110 IPR001461 GO:0004190|GO:0006508
Lele07g1180 497 PRINTS Pepsin (A1) aspartic protease family signature 414 429 IPR001461 GO:0004190|GO:0006508
Lele07g1180 497 PRINTS Pepsin (A1) aspartic protease family signature 317 328 IPR001461 GO:0004190|GO:0006508
Lele07g1180 497 PANTHER ASPARTYL PROTEASES 20 436 IPR001461 GO:0004190|GO:0006508
Lele07g1180 497 FunFam Aspartic proteinase-like protein 2 271 449 - -
Lele07g1180 497 CDD pepsin_A_like_plant 84 442 IPR034161 -
Lele07g1180 497 Gene3D Acid Proteases 69 270 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1180 Lele-ChrLele07 7125059 7129507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1180 81 443 Miscellaneous Gene Families AT1G44130 28.010 6.97e-42 152
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g1180 07 7125059 7129507 Lele13g1713 13 25655055 25659144 CCT
Lele07g1180 07 7125059 7129507 Lele14g1656 14 24060404 24061157 CCT
Lele07g1180 07 7125059 7129507 Lele15g0703 15 4046444 4063908 CCT
Lele07g1180 07 7125059 7129507 Lele16g0706 16 3978064 3982239 CCT
Lele07g1180 07 7125059 7129507 Lele07g1180 07 7125059 7129507 ECH
Lele05g1137 05 7100955 7105378 Lele07g1180 07 7125059 7129507 hybridization
Lele06g1000 06 6203040 6207861 Lele07g1180 07 7125059 7129507 hybridization