Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1179 ATGGCGAATACTACGTCGGTCGCCTCCACCGCTGCGTCGCTTTACGTCGGCGATCTCCACCCTGACATCACCGATGGTAAGCTGTTTGAAATATTCTCCGAGTTCAAGAGCCTCACTTCTGTTCGGGTCTGTAGGGACTCCTCTACCGGCAGGTCGCTCTGTTACGGCTACGTCAACTTCGTCTCTCCTCAAGATGCAATTCGTGCTATTGAGGTGAAGAATCATTCTATACTGAATGGAAAAGCGATAAGGATCATGTGGTCAAATCGTGATCCTCATGCAACTAAAAGTGTCATAGGGAATGTGTTTGTTAAGAACCTACCTGAAACAATAGATAATGTGGGACTACAAGATTTGTTTCAAAAGTTTGGTATTATTTTGTCCTGCAAAGTTGTCATGTCTGACGATGGAAAAAGCAAAGGATATGGCTATGTTCAATTTCAGTCAGAGGAATCTGCAAATTCTGCCATCGAGAAGCTCAATGGCTCTACTGTTAACGACAAGCAAATCTATGTTGGAAAGTTTGTCAAAAAAAGTGACCGCATTTTGCCAAATCCTGATGCGAAATATACAAATTTGTATTTCAAGAATTTGGACCCCAAAATTACTGAAGAGCTTCTACAGGAAAAGTTCTCGTCTTTTGGGAAAATTGTTAGCTTAGTTATTGCGAAGGATGACAATGGGATTTCAAAGGGTTTTGGCTTCGTGAACTATGATAAACCAGATGATGCCAGACGGGCAATGGAAGGAATGAATGGATCACAACTTGGTTCAAAGATTCTATACGTAGCCAGAGCACAAAAGAAGGCCGAACGTGAGCTTATTTTGCACCATCAGTTTGAGGAGAAACGCAAGGAACAAATCTTAAAATACAAGGTATCAAATGTTTATGTGAAGAACATTGATGATGACGTAAGTGATGAAGAACTACGGAATCTTTTTCGTGCATGTGGCTCAATAACATCTGCAGTAGTTATGCGAGATGGCAAAGGTATAAGCAAGGGGTTTGGTTTCGTCTGCTTCTCCAACCCTGAGGAGGCTAATAAAGCTGTGAACACCTTTCATGGATATATGTTTCATCGCAAACCATTACATGTTGCTATTGCTCAAAGGAAGGAGGATAGGCAAGCACAATTGCAGATTCAACATGCACAGCGAATGGCAGGACTATCTGGACCTTCAATAGCTGTTATTCCTGGCGGATATTCTCCTTATTATTATGCAGCTACCGGGGCCGTTTCACAGGTTCCTTCTCGACCTAGCCTAATTTATCAACCTTTGGGGTTGACACAGGGATGGACGGCTAACAGCTTTGCACCTCCTACCAGACCATTTCAACAGCCACTAGTTCCTATGGTTTCCAATTCTACAAGGCAAAATAGGCAAAACAGGGGCAGGATGAATGGGCAAACAATTTCACAAGGAAATCTTCACTCTGCTCCACATGTGCCCCAATTGCGTCAGCCTTTTCAGCCAGTGAACTCTTCAAAAGAATTAAGTACACAACAGCGAGCTGGGCTAACAAAGTACGTGCCCAGTGGGCGCCAGCCTGAAATGGAGAAAGTATCTGGAGTCTCCTCTGGTGGTAGCTCTTCTGTAGGATCTTCGGGATCAGAAATGCTGCATAGCATGCTTGCCGCTGCTACTCTAGAGCAGCAGAAACAGATCCTCGGCGAGCATCTGTATCCTTTAATCCATAAACTCAAGCCTGGCCTAGCAGCGAAGATTACAGGAATGCTTTTGGAGATGGACAATGGAGAATTGTTGCTTCTCCTGGAGTCTCCAGAGTCTCTTACTGCCAAGGTGGAAGAAGCCGTGAAGGTGCTCAAGAACTCTAAGACCCAAGTTTCTGGCCAGGATGTACTTCATCCTAATTTCCTTTCAGCTGAAGTTGCGGTGAACTGA 1905 0.4415 MANTTSVASTAASLYVGDLHPDITDGKLFEIFSEFKSLTSVRVCRDSSTGRSLCYGYVNFVSPQDAIRAIEVKNHSILNGKAIRIMWSNRDPHATKSVIGNVFVKNLPETIDNVGLQDLFQKFGIILSCKVVMSDDGKSKGYGYVQFQSEESANSAIEKLNGSTVNDKQIYVGKFVKKSDRILPNPDAKYTNLYFKNLDPKITEELLQEKFSSFGKIVSLVIAKDDNGISKGFGFVNYDKPDDARRAMEGMNGSQLGSKILYVARAQKKAERELILHHQFEEKRKEQILKYKVSNVYVKNIDDDVSDEELRNLFRACGSITSAVVMRDGKGISKGFGFVCFSNPEEANKAVNTFHGYMFHRKPLHVAIAQRKEDRQAQLQIQHAQRMAGLSGPSIAVIPGGYSPYYYAATGAVSQVPSRPSLIYQPLGLTQGWTANSFAPPTRPFQQPLVPMVSNSTRQNRQNRGRMNGQTISQGNLHSAPHVPQLRQPFQPVNSSKELSTQQRAGLTKYVPSGRQPEMEKVSGVSSGGSSSVGSSGSEMLHSMLAAATLEQQKQILGEHLYPLIHKLKPGLAAKITGMLLEMDNGELLLLLESPESLTAKVEEAVKVLKNSKTQVSGQDVLHPNFLSAEVAVN 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1179 634 MobiDBLite consensus disorder prediction 523 537 - -
Lele07g1179 634 CDD RRM1_I_PABPs 13 92 - -
Lele07g1179 634 CDD RRM4_I_PABPs 294 371 - -
Lele07g1179 634 SMART rrm2_1 101 173 IPR003954 GO:0003676
Lele07g1179 634 SMART rrm2_1 192 264 IPR003954 GO:0003676
Lele07g1179 634 SMART rrm2_1 295 367 IPR003954 GO:0003676
Lele07g1179 634 SUPERFAMILY RNA-binding domain, RBD 10 94 IPR035979 GO:0003676
Lele07g1179 634 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Lele07g1179 634 SMART poly_2 549 612 IPR002004 GO:0003723
Lele07g1179 634 CDD RRM2_I_PABPs 99 174 IPR045305 -
Lele07g1179 634 Gene3D - 535 624 - -
Lele07g1179 634 MobiDBLite consensus disorder prediction 513 537 - -
Lele07g1179 634 FunFam Polyadenylate-binding protein 101 181 - -
Lele07g1179 634 Gene3D - 2 98 IPR012677 -
Lele07g1179 634 PANTHER RNA BINDING PROTEIN 290 511 - -
Lele07g1179 634 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 12 610 IPR006515 GO:0003723
Lele07g1179 634 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Lele07g1179 634 Pfam Poly-adenylate binding protein, unique domain 544 609 IPR002004 GO:0003723
Lele07g1179 634 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 537 614 IPR002004 GO:0003723
Lele07g1179 634 FunFam Polyadenylate-binding protein 182 276 - -
Lele07g1179 634 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Lele07g1179 634 SMART rrm1_1 295 367 IPR000504 GO:0003723
Lele07g1179 634 SMART rrm1_1 101 173 IPR000504 GO:0003723
Lele07g1179 634 SMART rrm1_1 192 264 IPR000504 GO:0003723
Lele07g1179 634 SMART rrm1_1 13 86 IPR000504 GO:0003723
Lele07g1179 634 FunFam Polyadenylate-binding protein 4 99 - -
Lele07g1179 634 SUPERFAMILY PABC (PABP) domain 541 620 IPR036053 GO:0003723
Lele07g1179 634 FunFam Polyadenylate-binding protein 277 385 - -
Lele07g1179 634 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Lele07g1179 634 Gene3D - 100 181 IPR012677 -
Lele07g1179 634 SUPERFAMILY RNA-binding domain, RBD 291 391 IPR035979 GO:0003676
Lele07g1179 634 SUPERFAMILY RNA-binding domain, RBD 101 271 IPR035979 GO:0003676
Lele07g1179 634 FunFam Polyadenylate-binding protein 535 621 - -
Lele07g1179 634 Gene3D - 182 275 IPR012677 -
Lele07g1179 634 Gene3D - 276 385 IPR012677 -
Lele07g1179 634 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 84 IPR000504 GO:0003723
Lele07g1179 634 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 365 IPR000504 GO:0003723
Lele07g1179 634 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 260 IPR000504 GO:0003723
Lele07g1179 634 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1179 Lele-ChrLele07 7117232 7121712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1179 12 632 Eukaryotic Initiation Factors Gene Family AT2G36660 52.160 0.0 619
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1702 13 25604335 25607278 Lele07g1179 07 7117232 7121712 CCT
Lele14g1644 14 24003211 24006751 Lele07g1179 07 7117232 7121712 CCT
Lele15g0711 15 4101334 4111153 Lele07g1179 07 7117232 7121712 CCT
Lele16g0717 16 4043677 4046406 Lele07g1179 07 7117232 7121712 CCT
Lele07g1179 07 7117232 7121712 Lele07g1179 07 7117232 7121712 ECH
Lele05g1136 05 7091145 7094812 Lele07g1179 07 7117232 7121712 hybridization
Lele06g0999 06 6196303 6200740 Lele07g1179 07 7117232 7121712 hybridization