Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1154 ATGTTTGTTATATCCCGAATGAAATTTGTTGCATGCTCGCATTACTTGATAGCATATGCTAAACCAAATGTGTCCAACATTCAGTACCTGATATCGACGGTATATAGTCAGTACTTGATATGCTTTCATATGTCAACTGATCATTTCATCCTGTTGCTTCTGAAAGACATGTTTGTTGGTGTCGAGGTGAAAAATGGAGAATCTCTCAAGGTTACCCCAGGAGAAGACATGATCTTGCATCTTACACAGGCATGTCTGGGAATCAAGCAAGGAAAGGAGAATGAACCAGTCTGCCTTTTTGTGAAATTTGGTGATCAAAAGCTTGATGTCAAGGAGGAAAATGTAGAACCTCTCGAGGTTACCCCAATAGAAGACATGATCTTGCATCTTACACAGGCAAGTCAAGGAAAGGAGAACGAACCAGTCTGCCTCTTTGTGAAATTTGGTGATCAAAAGCTTGGGATTGGAATTCTTTCACCTGAAAAGTTCCCTCAAATATCTCTTAATTTGGAAGTGACTGATAGTTCTGATTATGAAGATGATGCTAGTCCAGTTAATGCTGCCAATGGGGAACATGAATATAAAATGAAGAATGTTGTGCTTGCAGTTGAAGCTAACCGGACGGGAAAGATGAGGGGTGCAAGAAAGGATGACAATGTTGAAGATGAGGAAGATTCATCCGAATCTGATGAGTCGAGTGAGGATTCTGGTAAAGATGAGCCCACTGAGGATGGTGGTGAGACTGGAAGTAGTGAAGATGAAGATGATAGTGATGAGGAAGACAATGAAGAAAGTGAGGATGAAGAGAGGCCCAAGAAGCTTGAAGCTGGCATCAAGAGGCCTGCCGAATCTTCTAAGAAAACACCTTTTCCTGAGAAGAAGGCAAAATCAGTTACTCCTCACAAGACTGGTAACTATATTAGCGTTTTACATCTTAACTCATTATTGCAGGAGATAGATTATTTTGCTCGGGTATGTGCTGATGGCAAAAAGTGGGGCCATGTCCGCATTGCGACTCCTTACCCCTCTAAGCAGGCTGGGAAGGCAGCTCCGATCAACGCAGCGCGGGTGAAGCAGCATACTCGCAAATCGACTGGAGAGTATAGCTGCACGCCTTGTAACAGGGCATTTAAAACTGAAGATGGATTGCAATCTCATACTAGGGCCAAGCACAGTGCCTAA 1182 0.4298 MFVISRMKFVACSHYLIAYAKPNVSNIQYLISTVYSQYLICFHMSTDHFILLLLKDMFVGVEVKNGESLKVTPGEDMILHLTQACLGIKQGKENEPVCLFVKFGDQKLDVKEENVEPLEVTPIEDMILHLTQASQGKENEPVCLFVKFGDQKLGIGILSPEKFPQISLNLEVTDSSDYEDDASPVNAANGEHEYKMKNVVLAVEANRTGKMRGARKDDNVEDEEDSSESDESSEDSGKDEPTEDGGETGSSEDEDDSDEEDNEESEDEERPKKLEAGIKRPAESSKKTPFPEKKAKSVTPHKTGNYISVLHLNSLLQEIDYFARVCADGKKWGHVRIATPYPSKQAGKAAPINAARVKQHTRKSTGEYSCTPCNRAFKTEDGLQSHTRAKHSA 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1154 393 Pfam Nucleoplasmin-like domain 60 176 IPR041232 -
Lele07g1154 393 MobiDBLite consensus disorder prediction 221 266 - -
Lele07g1154 393 ProSitePatterns Zinc finger C2H2 type domain signature. 370 391 IPR013087 -
Lele07g1154 393 ProSiteProfiles Zinc finger C2H2 type domain profile. 368 393 IPR013087 -
Lele07g1154 393 Gene3D Classic Zinc Finger 332 393 - -
Lele07g1154 393 MobiDBLite consensus disorder prediction 210 299 - -
Lele07g1154 393 MobiDBLite consensus disorder prediction 267 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1154 Lele-ChrLele07 6981789 6985592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1154 280 393 C2H2 Transcription Factor Family AT5G03740 43.220 3.76e-15 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele07g1154 None None None