Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1146 ATGGATAGCTCGCGTAGACCGTTTGATAGATCGAGAGAGCCGGGTATCAAGAAACCCCGACTGACCGACGAGCTCGAGCGTGGCTCAAATTCCAGTCTCCGACCTTTTCCTCAGCGACAAGTGGCTTCTGGAGTTAATTCATTGGCCCCGGCAAGGTTTAGGATAAATGACAGAGATTCCGAAGGCAGTGACCCTGGTCGCGGTGGATACCAGCCCCAACCGCTCCACCAAGAGCTTGTTAATCAGTACAAAACCGCACTTGCTGAGCTGACATTCAATTCTAAACCGATAATTACCAACTTGACCATAATTGCAGGCGAGAATCTTTATGCCGCGAAGGCAATTGCTGCCACTGTTTGTGCTAACATTCTAGAGGTTCCCACTGAACAAAAGCTGCCATCTCTTTATCTTTTAGACAGTATTGTTAAGAATATTGGGCGGGACTATATAAAATACTTTGCTGCTAGACTACCTGAGGTATTCTGCAAGGCATACAGACAGGTTGGTTCTTCTGTCCATTCAAGTATGAGGCACCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCCCAGACCCTCCAGATGATTGAGAAGGAACTTGGCTTCACTCCTGCTGTCAATGGTTCATCTTCTGCATCTGTACTGAGGAGTGATTCACAGTCACAACGACCACAGCATAGTATCCATGTGAATCCTAAATATTTGGAGAGGCAGCGTCTTCAGCAGTCTGGCAGGATTAAAGGAACAGGTAATGATGTTGCCGGAACCACTACAAACTCTAGTGATGGCTCAGAAAGGCCAGATAGAGCATTAGGTGCTGCACGAACATGGGTGGATTCAAGTGGTAACGTGCATAACATTCAGGGTTCTAATAGAGATTCATATAATGATTCTGTTCCTGAGAAGGGCATTGGCACATCCTATGGAGGCAATGAATATGGTTCTGATCTTTCAAGGAATTCAGGTTTGGTTACTAGAAGAGCTGGCGGCAGGACCTCTGAGTTGGCCCGTGATAAAGCTTGGCACAAATCAGGCAGCAATGCCGCAGACATGATGATGTCTGTCGAAAGGAATGGTTTCAGTCTCAAGCGTAGCTTACCAAATCATGAAGCACCAGAGTCCATCAACTGGGATGAACATAATCAGCCAACACAAAGCTTAACTAGCATAAAGAGTAGTGTCTTATCAAGTAGCTGGAAAAATTCTGAGGAAGAGGAGTACATGTGGGATGGGGTGAATGATGGACTGACTGAGCATGGTGCACCCAATGCCTCTAACAACTTGAACAAAGATTGTTGGACTTCTGATGATGACCATTTGGCAGTTGAAGGTCGCCTTCAAAGCACGTTCCATGAAGATAGAGACGTATCCACTGAAATGAAACGCCTACCTGCTTTTGGTCATCAACCATCGTTATCTTGGAAATCACAGCAGCAGCAGCAGCAGTCATTTGATGAACTGAATCATAGGTCATGTCCTTCAGAAGGCATTGGATCCACTCTTGGCAGGTTGCCAAACGTCGTGAATTCTTCTAATGTCAAAATGGGAAACAGGCCTTTCTTGTCAAATGCCACATTAGGATCGGTAGGAACAGTGCAACAACAGCAATTTCATTCTGTGGGAGCAGACTCTTCTTCTTGGCAGTCACCTTTACGACAACAGTCTCCATCACCTCCATTTAATGCGCACCATCCTCATCAAATGCAGATTTTGGCTGAGCAAGCCCATCCACAGACTCTTAAAAAGTCTCAATTTCCAGAACGTCTATGGAGCCAAGATATTCAAGATTCATCATCTGTCATTCCACATACTGTTCAGGTTGGTAACTCACAGAGATCACATCAAAAGGACTTCCAAGGTCCATTGTCTTCAGTGTGTACTTTTCAGCCAAGACACCATAATGCAGCTTCACAGCCGCAGCATCTTGGTTCTAGTACTGAAGTGTCTGAGATGAAGGAAAAGATGACCCACTCTAAAGAAACATTAGAGCAGTCAACTACAAGTCCTGTGTTAGCTGCAGTTATGAAGAGCGGAATTTTCACCAGTGGTCAGCCTGGTACAAGTTTCTTGGATAGAAGGAACCTGCCATCGAAATCAGGGGTTCAGCCTACCCGACCAAGTGGATCATCTCCTACAACATCAGTTTCTTCTGAGTCTGGGGTTGCATCTCCATCTCGATTAGGTCCTTCTAATGATGACTCATCTACTCTGCCAAAAGAATCTCAAGGAAAGGTTGGAGCCCCATCAAGGCGACCTGCTCCACCACCAGCTTCCTCTACTGTGAGTAGTGCCTCAGCCAAGACGTCAAATGCCACCAATAATAAATCTAATCCAGTTTCAAAACTTTTAAACTCATTAGTTGCAAAGGGTTTGATTTCTGCAAAAATAGATTCATCTACTGATGCGCCAGCTGAGGTGCTGACTCGATTGGAAGATCAGAGCCAAAGCATCACCACCAGTAGTACTTTGGCAGATGTTTCAGTTACTGGTTCGGCAACTGTTCCTGTTTTACCTACCGGAGATGATCAGCCTGCAAAAGGTTCCTCCGGTCAATCAACCCCCACAGAAATAAGAAGTCTAATTGGCTTTGAGTTTAAGCCCAGTGTGATCCGGGAATTGCATTTACCCGTGATCAGAGAACTATTTGATAATTTCCCTCATCATTGCAGCATTTGTGGCCTTAGGCTTAAACATCAAGAACAATTTAATAGACACTTGGAGTGGCATGCTATGAGAGAAAGAGAACAAAATGATATATTGAAGGCCTCAAGGAGATGGTATTTAAGGTCAAGTGACTGGGTTGTTGGCAAGGATGAAATTTCATCTGAGTATGAGGGTATTGATTCCATAGATTTACATGGCAATAAATCAGACAGAAGTGAAGAGGATGCTAAGGTTCCATCTGATGAAGATCAGTGCTTATGTATGCTGTGTGGTGAGCTGTTTGAAGATGTTTATTGTCAAGAAAGGGATGAGTGGATGTTCAAAGGGGCGGTTTGCCTACCTGTCTTCAGTAGCGATAGTGAGATGTATATTAACGTCGGTAGCAAAGGGGGGCCCATTGTTCACACTTGGTGCTTATCAGAGAGTTCTATATATAGCGCTCCTACGAAGGAACAGGAATAG 3123 0.4473 MDSSRRPFDRSREPGIKKPRLTDELERGSNSSLRPFPQRQVASGVNSLAPARFRINDRDSEGSDPGRGGYQPQPLHQELVNQYKTALAELTFNSKPIITNLTIIAGENLYAAKAIAATVCANILEVPTEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVGSSVHSSMRHLFGTWKGVFPPQTLQMIEKELGFTPAVNGSSSASVLRSDSQSQRPQHSIHVNPKYLERQRLQQSGRIKGTGNDVAGTTTNSSDGSERPDRALGAARTWVDSSGNVHNIQGSNRDSYNDSVPEKGIGTSYGGNEYGSDLSRNSGLVTRRAGGRTSELARDKAWHKSGSNAADMMMSVERNGFSLKRSLPNHEAPESINWDEHNQPTQSLTSIKSSVLSSSWKNSEEEEYMWDGVNDGLTEHGAPNASNNLNKDCWTSDDDHLAVEGRLQSTFHEDRDVSTEMKRLPAFGHQPSLSWKSQQQQQQSFDELNHRSCPSEGIGSTLGRLPNVVNSSNVKMGNRPFLSNATLGSVGTVQQQQFHSVGADSSSWQSPLRQQSPSPPFNAHHPHQMQILAEQAHPQTLKKSQFPERLWSQDIQDSSSVIPHTVQVGNSQRSHQKDFQGPLSSVCTFQPRHHNAASQPQHLGSSTEVSEMKEKMTHSKETLEQSTTSPVLAAVMKSGIFTSGQPGTSFLDRRNLPSKSGVQPTRPSGSSPTTSVSSESGVASPSRLGPSNDDSSTLPKESQGKVGAPSRRPAPPPASSTVSSASAKTSNATNNKSNPVSKLLNSLVAKGLISAKIDSSTDAPAEVLTRLEDQSQSITTSSTLADVSVTGSATVPVLPTGDDQPAKGSSGQSTPTEIRSLIGFEFKPSVIRELHLPVIRELFDNFPHHCSICGLRLKHQEQFNRHLEWHAMREREQNDILKASRRWYLRSSDWVVGKDEISSEYEGIDSIDLHGNKSDRSEEDAKVPSDEDQCLCMLCGELFEDVYCQERDEWMFKGAVCLPVFSSDSEMYINVGSKGGPIVHTWCLSESSIYSAPTKEQE 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1146 1040 MobiDBLite consensus disorder prediction 681 777 - -
Lele07g1146 1040 MobiDBLite consensus disorder prediction 533 563 - -
Lele07g1146 1040 MobiDBLite consensus disorder prediction 631 667 - -
Lele07g1146 1040 MobiDBLite consensus disorder prediction 210 227 - -
Lele07g1146 1040 Gene3D - 72 200 IPR008942 -
Lele07g1146 1040 MobiDBLite consensus disorder prediction 1 74 - -
Lele07g1146 1040 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 60 1030 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Lele07g1146 1040 MobiDBLite consensus disorder prediction 681 741 - -
Lele07g1146 1040 MobiDBLite consensus disorder prediction 755 777 - -
Lele07g1146 1040 MobiDBLite consensus disorder prediction 468 487 - -
Lele07g1146 1040 MobiDBLite consensus disorder prediction 834 853 - -
Lele07g1146 1040 MobiDBLite consensus disorder prediction 235 264 - -
Lele07g1146 1040 SUPERFAMILY ENTH/VHS domain 76 204 IPR008942 -
Lele07g1146 1040 MobiDBLite consensus disorder prediction 28 45 - -
Lele07g1146 1040 Pfam CID domain 84 194 IPR006569 -
Lele07g1146 1040 MobiDBLite consensus disorder prediction 631 645 - -
Lele07g1146 1040 SMART 558neu5 78 200 IPR006569 -
Lele07g1146 1040 MobiDBLite consensus disorder prediction 1 27 - -
Lele07g1146 1040 MobiDBLite consensus disorder prediction 469 487 - -
Lele07g1146 1040 MobiDBLite consensus disorder prediction 363 394 - -
Lele07g1146 1040 MobiDBLite consensus disorder prediction 533 561 - -
Lele07g1146 1040 MobiDBLite consensus disorder prediction 210 322 - -
Lele07g1146 1040 FunFam polyadenylation and cleavage factor homolog 4 72 200 - -
Lele07g1146 1040 MobiDBLite consensus disorder prediction 376 394 - -
Lele07g1146 1040 MobiDBLite consensus disorder prediction 278 300 - -
Lele07g1146 1040 ProSitePatterns Zinc finger C2H2 type domain signature. 888 908 IPR013087 -
Lele07g1146 1040 CDD CID_Pcf11 80 192 - -
Lele07g1146 1040 ProSiteProfiles CID domain profile. 75 203 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1146 Lele-ChrLele07 6921943 6929312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1146 52 236 C2H2 Transcription Factor Family AT4G04885 55.615 6.34e-54 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele07g1146 CID 3.3e-13 CL0020
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1683 13 25466331 25468553 Lele07g1146 07 6921943 6929312 CCT
Lele14g1622 14 23849259 23849636 Lele07g1146 07 6921943 6929312 CCT
Lele15g0736 15 4260664 4262545 Lele07g1146 07 6921943 6929312 CCT
Lele16g0742 16 4202395 4204115 Lele07g1146 07 6921943 6929312 CCT
Lele07g1146 07 6921943 6929312 Lele07g1146 07 6921943 6929312 ECH
Lele05g1105 05 6885948 6893343 Lele07g1146 07 6921943 6929312 hybridization
Lele06g0971 06 6003845 6006671 Lele07g1146 07 6921943 6929312 hybridization