Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1140 ATGCGTTCCAATACTCACTCTAGTTCTACCAGCGCTCCCACCGGAGCTAGCAGCAGCGGTGCAGCAACTGGGCGTCACCCGGTGTACCGGGGGGTGAGGCGTCGGAGTAGCGGGAAATGGGTGTCTGAAATTCGAGAGCCCAGGAAGCCCAATAGGATATGGTTAGGGACATTCCCTACCCCTGAAATGGCTGCCATTGCCTATGACGTGGCTGCCCTTGCCCTCAAAGGCAAGGATGCCGACCTTAACTTCCCTGACTCGGCTTCTTCGCTGCCCGTTCCGGCGTCTCGCTCTGCCCGTGATATTCAGATTGCTGCTGCCAGCGCTGCTGCTGCTGCTGGGGCAGCAAGGGATGCCTTACCCGGTCCCAATGAACAAGCGAATGCTAATGTTAGTGTTTCGGAGGGACAACAATATGCGGGGGCTGAGTTTGTGGACGAGGATTTGATCTTTGATTTACCTAATGTTCTTGTCAATATGGCTGAAGGAATGCTGCTAGCCCCTCCTCCTCTGGACTTTGCGGGGAAAAATGATGCTGATGATGATGCGGCCGGAGGCAACGTCGGTGGTGATGATCAAAACCTTTGGAAATTTCCATAA 600 0.545 MRSNTHSSSTSAPTGASSSGAATGRHPVYRGVRRRSSGKWVSEIREPRKPNRIWLGTFPTPEMAAIAYDVAALALKGKDADLNFPDSASSLPVPASRSARDIQIAAASAAAAAGAARDALPGPNEQANANVSVSEGQQYAGAEFVDEDLIFDLPNVLVNMAEGMLLAPPPLDFAGKNDADDDAAGGNVGGDDQNLWKFP 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1140 199 SUPERFAMILY DNA-binding domain 28 87 IPR016177 GO:0003677
Lele07g1140 199 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Lele07g1140 199 MobiDBLite consensus disorder prediction 1 46 - -
Lele07g1140 199 Pfam AP2 domain 27 77 IPR001471 GO:0003700|GO:0006355
Lele07g1140 199 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 21 197 IPR045277 GO:0003700
Lele07g1140 199 MobiDBLite consensus disorder prediction 176 199 - -
Lele07g1140 199 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Lele07g1140 199 MobiDBLite consensus disorder prediction 1 21 - -
Lele07g1140 199 Gene3D AP2/ERF domain 28 86 IPR036955 GO:0003700|GO:0006355
Lele07g1140 199 FunFam Ethylene-responsive transcription factor 2 27 86 - -
Lele07g1140 199 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Lele07g1140 199 PRINTS Ethylene responsive element binding protein signature 67 87 IPR001471 GO:0003700|GO:0006355
Lele07g1140 199 CDD AP2 29 87 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1140 Lele-ChrLele07 6879367 6879966 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1140 24 199 AP2-EREBP Transcription Factor Family AT2G36450 64.088 2.03e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele07g1140 AP2 6.9e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g1140 07 6879367 6879966 Lele07g1140 07 6879367 6879966 ECH
Lele05g1099 05 6843841 6844443 Lele07g1140 07 6879367 6879966 hybridization
Lele06g0965 06 5960095 5960700 Lele07g1140 07 6879367 6879966 hybridization