Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1078 ATGTCAACGAAACCCGATTACAAACTCTTCGGCGTCATACTTTCCACTTCCCAGTTTCCCGTCCCCACTCCTCTCTGCTGGCACTGCCGCTTCTCTGCGTTTCCAATGGCAGCGATCACAAGATTCGTTGGCACCCGTTCTGCTTTGGCTCGCTCTTCACTTGTTTCTCCTGCTCTCCTCAGTAGAGGAATTGCTTACAAGCTCTTCGTTGGAGGACTGTCATTTCTCACAACGGAGAAAGGATTGTCAGAAGCATTTTCTGGGTACGGTCAAGTTGTTGAAGCAAAAATTGTGATGGACAAGGTATCAGACAGATCAAAAGGGTTTGGGTTTGTCACCTTTGCCTCAGAGAATGAGGCTGAGAATGCTATAACAGGGATGAATGGGAAGGCACTAAACGGTCGTGTTATCTTTGTGGATTATGCAAAACCCAAATCCAATATTGGTGATGGAATGCCAATTGCCAGAGGACCTCCTGAACCAACAGCGCACAGTTAA 498 0.4719 MSTKPDYKLFGVILSTSQFPVPTPLCWHCRFSAFPMAAITRFVGTRSALARSSLVSPALLSRGIAYKLFVGGLSFLTTEKGLSEAFSGYGQVVEAKIVMDKVSDRSKGFGFVTFASENEAENAITGMNGKALNGRVIFVDYAKPKSNIGDGMPIARGPPEPTAHS 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1078 165 Coils Coil 164 165 - -
Lele07g1078 165 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 66 144 IPR000504 GO:0003723
Lele07g1078 165 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 68 137 IPR000504 GO:0003723
Lele07g1078 165 Gene3D - 56 148 IPR012677 -
Lele07g1078 165 SUPERFAMILY RNA-binding domain, RBD 66 157 IPR035979 GO:0003676
Lele07g1078 165 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 63 151 - -
Lele07g1078 165 SMART rrm1_1 67 140 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1078 Lele-ChrLele07 6513371 6515442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1078 67 146 Eukaryotic Initiation Factors Gene Family AT2G23350 35.000 1.46e-08 51.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g1078 07 6513371 6515442 Lele07g1078 07 6513371 6515442 ECH
Lele05g1043 05 6483759 6485752 Lele07g1078 07 6513371 6515442 hybridization