Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1075 ATGGAACCAATCACACGCTCTTTCAATCCTGAGGAAGAAGGGGAGGACCAAAAGGAAGCCATGTTCGAGAAGGCGTTAACGCCCAGCGACGTCGGGAAGCTGAACCGACTGGTGATCCCCAAGCAGCACGCCGAGAAGTACTTCCCACTCAGCGGGGGGGCTGCCGACGCCAAGGGCGTCTTGCTGAGTTTTGAGGACGAGTCCGGCAAGTGCTGGCGCTTCCGATACTCTTACTGGAACAGTAGCCAGAGTTACGTCTTGACCAAAGGCTGGAGCCGTTACGTCAAGGACAAGCGCCTCGACGCCGGCGACGTCGTTTCCTTTCACCGTCACCTTACAGATTCTCTCCGCCTTTTCATCTCCTGGAGGCGCCGCAACCCTCATGTCAGCCCACCATTTACCAGACCTATGCATATGATCGTCGCAAGCGATGCCTCTTGCAGAGGTGGCCATGGTTGTGCGGGTGTAGGATGGACCTCCCCTACACCTTTCTGTTCTGGGCATACTTATCCCGAGCATCAGCTTTTGCCATACCAACCTCAAACTCTTCATGCATCAGGAAGAGGTTTCCCAGCTGAAAGGACGGCGGTGGGAAACAGTTCAAGTAAGATGTCAGCCAGATGGGAAATCTCCCAGGATGAAGATTTTGGATGTGACATTTTTGATTTGACCCTTTTAACCCACTTGTCAGTAATGTTAAGTAGAGTGAGGAAGGTGAATGACGTCAGTCATGCGGGTTTCAACACGACAAATTATTCCTCATCCATGAGCACTAGTTTGGCCATCCAGTTCAACAGACAAGAAGATTACAACGTTAATGCGCGCCCCAGTGGCCAAGGCCAATTCCTCGGAGGACTGAACCAACCTGGCGCAATGATCACCGAATCCAATCATTGTGGCTTTAGACTCAGAATTGATACCAGAAAGCTTAGCGTTGAACCTCTGACCTCAGGGCAGGAATTGTTTAGAGGCCAACCCCCACATGATATTGCCGTTGAGTAG 1002 0.518 MEPITRSFNPEEEGEDQKEAMFEKALTPSDVGKLNRLVIPKQHAEKYFPLSGGAADAKGVLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVSFHRHLTDSLRLFISWRRRNPHVSPPFTRPMHMIVASDASCRGGHGCAGVGWTSPTPFCSGHTYPEHQLLPYQPQTLHASGRGFPAERTAVGNSSSKMSARWEISQDEDFGCDIFDLTLLTHLSVMLSRVRKVNDVSHAGFNTTNYSSSMSTSLAIQFNRQEDYNVNARPSGQGQFLGGLNQPGAMITESNHCGFRLRIDTRKLSVEPLTSGQELFRGQPPHDIAVE 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1075 333 Pfam B3 DNA binding domain 22 126 IPR003340 GO:0003677
Lele07g1075 333 SMART B3_2 22 126 IPR003340 GO:0003677
Lele07g1075 333 FunFam B3 domain-containing protein 15 133 - -
Lele07g1075 333 Gene3D - 11 130 IPR015300 -
Lele07g1075 333 ProSiteProfiles B3 DNA-binding domain profile. 22 126 IPR003340 GO:0003677
Lele07g1075 333 CDD B3_DNA 21 115 IPR003340 GO:0003677
Lele07g1075 333 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 12 196 IPR044800 GO:0003700
Lele07g1075 333 SUPERFAMILY DNA-binding pseudobarrel domain 18 126 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1075 Lele-ChrLele07 6491559 6496269 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1075 17 125 RAV Transcription Factor Family AT3G11580 76.471 5.21e-58 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele07g1075 B3 2.7e-29 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g1075 07 6491559 6496269 Lele07g1075 07 6491559 6496269 ECH
Lele06g0899 06 5584799 5589669 Lele07g1075 07 6491559 6496269 hybridization