LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele07g1046	ATGAACCCAGGCTACATCCAGTACTCCGACACGCCTCCGCCGCAACCATCGCATCCTGGCAACCTTGTCTTCTTCAATTCTGCAAACAACTCGCTCCCTCCCCAAACCCTACAACACGCGCCACCCTCTCAAACCCAACAATTTGTCGGCATCCCTCTCCCCGCCGCCTCTTCCCACGACCCCACGCACCCCCATCACGATGTCTCTGCTCTGCATGGATTCGTGCCCCGCATGCAGTACAACCTCTGGAGCACGGTTAACTCCAACGCGGCGGCGAGTGATACCCCACGCTCTCAACAGGGTCTCTCCCTCAGCCTTTCTTCTCAGCAGGCAGGGATGGGGTCTTTCCGAGTCGAGCGTGACGTACCATCACAGGGTCAGGCGCCAGCCATGTCAGGGGATGATGTACGTGCGTCAGGTGGTTCATCGTCTTCGGCGTCTGGAGTTACTAATGGCGTTTCAGGGATTCAGAGCGTGCTCCTGGGCTCTAAGTACTTGAAGGCGGCGCAGGAACTGCTAGACGAGGTCGTGAACGTGAACGATGGCATAACGAGCGAAAAGGCAAAGAAAAGTAGCAGCCAGGCAAAGGCAATTAAATATCCTTCCACGGCGGCAAGTGGAGATGGTTCACCTGGCGGAGAGGGAAGCGCCAAGCCCAGCTCTGAGCTCTCTACTGCAGAAAAACAAGATATTCAGATGAAGAAGGCCAAGTTAATCAACATGCTTGACGAGGTGGAGCAGAGGTACAGACAGTATCACCATCAGATGCAGATTGTGAGTTCTTCGTTTGAACAAGCAGCAGGGATTGGGTCAGCGAGAACATACACAGCACTGGCACTACAAACGATCTCGAAGCAGTTTCGGTGTTTGAAAGATGCAATATTGGGCCAAATTCGAGCCGCCAACAAGAGCTTAGGAGAGGAAGATTGCTTTGGTACAAAAATGGAAGGTTCGAGGTTTAAATACGTGGACCATCATCTTCGCCAACAGCGAGCTCTCCAACAGTTGGGTATGATTCAGCACAATGCTTGGAGACCCCAGAGAGGACTGCCTGAAAGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTCGAGCACTTCCTCCACCCTTACCCCAAGGACTCTGACAAACACATGCTTGCAAAACAAACAGGGCTCACCAGGAGCCAGGTCTCAAATTGGTTCATAAATGCGCGAGTCCGATTGTGGAAGCCGATGGTGGAAGAAATGTACTTGGAGGAGATGAAGGAGCATGAACAGAACGGTAGGGATGAGAGATCAAGCAAGAGTAGTGAAGATCCTGCCATGAAATCTGCAGCAGCCCCACAAGAGAAATCTCCTGCCTCTACAACTGAACCCAAGAGCTTGAATTTCAAACAAGACATTTCCACAAACCCCAACATTCCAACAGTTTCAGTCTCTACGCCATCAACATCACCAGTTGGAGGAAATGCCAGAAACCACCCAGGGTTCAGCTTCATGGGGACTTCAGAGTTAGATGGGATCGCACAACCGAGTCCCAAGAAACCAAGGAACCACGAGATTCTGCAGTCCACAATTAACGTTGATATGAAGCCTGATGATGCAGGGAATGGTCAAATCTCCATGAAATTCGGTGATGAGAGGCAGAGCAGAGATGGGTACTCTTTCATGGGAAATCAGACGAACTTCATCGGAGGATTTGGGCAATACCCAATTGCAGAAATTGATAGGTTTGAAGCAGAGCAATTCACACCAAGGTTCTCAGGTAATAATGGGGTTTCCCTCACTCTTGGTCTTCCCCACTGTGACTCATTGTCAGCAGCAACACATCAAACATTTCTTCCAAACCAGAGCATTCAACTCGGGAGAAGGATGGAGCTGGGTGAACCAAACGAGTTTGGTGGCATAAACACTTCAACTCCTCTCTCTTCAGCTGCATTTGAGAATATCAATATGCAGAACCCCAAGAAGTTTGCTGCACAGTTGTTGCCAGATTTCGTGGCTTGA	1986	0.504	MNPGYIQYSDTPPPQPSHPGNLVFFNSANNSLPPQTLQHAPPSQTQQFVGIPLPAASSHDPTHPHHDVSALHGFVPRMQYNLWSTVNSNAAASDTPRSQQGLSLSLSSQQAGMGSFRVERDVPSQGQAPAMSGDDVRASGGSSSSASGVTNGVSGIQSVLLGSKYLKAAQELLDEVVNVNDGITSEKAKKSSSQAKAIKYPSTAASGDGSPGGEGSAKPSSELSTAEKQDIQMKKAKLINMLDEVEQRYRQYHHQMQIVSSSFEQAAGIGSARTYTALALQTISKQFRCLKDAILGQIRAANKSLGEEDCFGTKMEGSRFKYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKEHEQNGRDERSSKSSEDPAMKSAAAPQEKSPASTTEPKSLNFKQDISTNPNIPTVSVSTPSTSPVGGNARNHPGFSFMGTSELDGIAQPSPKKPRNHEILQSTINVDMKPDDAGNGQISMKFGDERQSRDGYSFMGNQTNFIGGFGQYPIAEIDRFEAEQFTPRFSGNNGVSLTLGLPHCDSLSAATHQTFLPNQSIQLGRRMELGEPNEFGGINTSTPLSSAAFENINMQNPKKFAAQLLPDFVA	661

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele07g1046	661	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	66	430	-	-
	Lele07g1046	661	Gene3D	-	347	426	-	-
	Lele07g1046	661	MobiDBLite	consensus disorder prediction	91	114	-	-
	Lele07g1046	661	Pfam	Homeobox KN domain	361	400	IPR008422	GO:0003677\|GO:0006355
	Lele07g1046	661	MobiDBLite	consensus disorder prediction	442	484	-	-
	Lele07g1046	661	FunFam	BEL1-like homeodomain protein 9	347	409	-	-
	Lele07g1046	661	Pfam	Associated with HOX	159	294	IPR006563	-
	Lele07g1046	661	Coils	Coil	228	255	-	-
	Lele07g1046	661	MobiDBLite	consensus disorder prediction	186	229	-	-
	Lele07g1046	661	MobiDBLite	consensus disorder prediction	415	431	-	-
	Lele07g1046	661	MobiDBLite	consensus disorder prediction	91	149	-	-
	Lele07g1046	661	CDD	homeodomain	344	405	IPR001356	GO:0003677
	Lele07g1046	661	MobiDBLite	consensus disorder prediction	415	484	-	-
	Lele07g1046	661	SMART	HOX_1	344	408	IPR001356	GO:0003677
	Lele07g1046	661	SMART	prehox3	154	296	IPR006563	-
	Lele07g1046	661	MobiDBLite	consensus disorder prediction	186	200	-	-
	Lele07g1046	661	SUPERFAMILY	Homeodomain-like	345	411	IPR009057	-
	Lele07g1046	661	ProSiteProfiles	'Homeobox' domain profile.	341	404	IPR001356	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele07g1046	Lele-ChrLele07	6310435	6312811	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele07g1046	39	661	Homeobox Transcription Factor Family	AT2G35940	51.880	7.69e-178	520

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-BELL	Lele07g1046		POX	8.5e-50	No_clan