Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1042 ATGGACGACAATATTGAAGTTCCTACCTTCTTTTTGTGTCCCATCTCCTTGGAAATCATGAAGGATCCAATCACTGTCTCCTCCGGGATTACCTACGACAGAGGGAGCATCGAGAAATGGCTCTTCTCCGGCAAAAACGAGACCTGCCCAGTCACCAAATTACCTCTCTCCGTATCAGACTCCTATGACCTCGTTCCCAACCACACCCTTCGTCGTTTGATTCAATCCTGGTGTACCCTCAACGCTTCTCACGGCATCCAGAGGATCCCCACGCCAAAACCGCCCGTCACCAAAACCCAAGTTGCCAAAATCATCAAAGACGCTTCTCAATCTTCTCATTCACCCGTGAAATGCCTCCAAACGCTCAAATCCATTGCTTCCGAAAGCGACGCCAATAAACGTAGCATAGAAGCCGCCGGCGCCGTTGAATTCTTAGCATCCATTGTACTTCGTCACACGAATTTCTCCTACACACCTGAAGAGGCCAGCCCTGATGACGATGGGTTTGAACTGAAAACCAGCGGAGGTGAGGAAGCCTTAAGCATCCTCCATGGCCTCCACCTGTCCGAGGCTGGCTTCAAGAGTCTAGTAGCCTTCGAAAATGGATCATTCATTGACTGCTTAACCAGGATCATGCAGAGGGGATTCTACGAGTCACGAGCTTATGCGGTCTTATTGTTAAAATCCATGTTCGAAGTGGCTGATCCGACGGTTTTATCCCATTTAAAACCCGAAATGTTCGTTGAATTAGTACAGCTATTGAAAGACCAGATATCCGAGCAAGCCTCCAAGGCTACCCTGAGAACACTGATCCAAACATGTCCATGGGGGAGAAACAGAATAAGAGCAGTGGAAGCAGGAGGCGTCTCGGTGTTGATTGAGCTTCTTCTAGATTGTAAGGGCAGGAAGCCATGTGAGATGATGTTGGTGTTGTTGGAGATGTTGTGTGGGTGTGCCGAGGGGAGAGCTGAGTTACTGAGTCATGACGCAGGGATCGCCATAGTTTCGAAGAAGATTCTGAGGGTTTCGACGATGGCCAACGATAGGGCGGTGAGGATTCTGCTGTCCATTGCCAAGTTCTCTGCAAGTCCGAGGGTTTTGCAGGAGATGTTGGAGGTTGGCGTGGTGGCGAAGCTGTGTTTGGTGCTTCAAGTGGAGAGTGGGAGAAAGGTTCAGGACAGAGCCAGAGAGATTCTCAGAATGCATTCTCGGGCTTGGAGGAGTTCTCCATGCGTACCCAGCAATTTGCTTTCTTCTTACCCGAATTGA 1269 0.4957 MDDNIEVPTFFLCPISLEIMKDPITVSSGITYDRGSIEKWLFSGKNETCPVTKLPLSVSDSYDLVPNHTLRRLIQSWCTLNASHGIQRIPTPKPPVTKTQVAKIIKDASQSSHSPVKCLQTLKSIASESDANKRSIEAAGAVEFLASIVLRHTNFSYTPEEASPDDDGFELKTSGGEEALSILHGLHLSEAGFKSLVAFENGSFIDCLTRIMQRGFYESRAYAVLLLKSMFEVADPTVLSHLKPEMFVELVQLLKDQISEQASKATLRTLIQTCPWGRNRIRAVEAGGVSVLIELLLDCKGRKPCEMMLVLLEMLCGCAEGRAELLSHDAGIAIVSKKILRVSTMANDRAVRILLSIAKFSASPRVLQEMLEVGVVAKLCLVLQVESGRKVQDRAREILRMHSRAWRSSPCVPSNLLSSYPN 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1042 422 ProSiteProfiles U-box domain profile. 6 84 IPR003613 GO:0004842|GO:0016567
Lele07g1042 422 PANTHER WDSAM1 PROTEIN 5 413 IPR045185 GO:0061630
Lele07g1042 422 CDD RING-Ubox_PUB 11 53 IPR045210 -
Lele07g1042 422 Gene3D - 97 409 IPR011989 -
Lele07g1042 422 SUPERFAMILY ARM repeat 118 406 IPR016024 -
Lele07g1042 422 SMART Ubox_2 10 77 IPR003613 GO:0004842|GO:0016567
Lele07g1042 422 SUPERFAMILY RING/U-box 4 83 - -
Lele07g1042 422 FunFam RING-type E3 ubiquitin transferase 1 87 - -
Lele07g1042 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Lele07g1042 422 Pfam U-box domain 7 79 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1042 Lele-ChrLele07 6284746 6286014 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1042 1 421 U-box Gene Family AT3G52450 55.023 1.83e-167 475