Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1039 ATGAATGACTTGTTCTCTAGCTCCTTCTCTCGTTTCCGTAGCGAGGCCTCGTCGCAGGACCATCACCAGCACCATGTCATCGAGATGGGTTCCGTCGCGGCCTCCACCAGCGCCGGCAACCTTGACAAGTTCTTCGAGGACGTAGAATCTATAAAGGACGAGCTGAAAGAGCTCGAAAGACTGAACCAGAATCTGCAGAGCTCTCACGAGCAGAGCAAGACCCTTCACAATGCCCAGGCCGTCAAGGACCTTCGCTCGCGCATGGACAGCGACGTTGCTCTTGCTCTCAAGAAAGCGAAGCTCATCAAGGTCAAATTGGAGGCCCTGAAGCGATCTAACGCCGCCTGCCGGACCCTTCCCGATTGCGGACCCGGGTCGTCATCGGACCGCACTCGGACGTCCGTGGTGAATGGTTTGAGGAAGAACATGAAGGACTCCATGGAAAGTTTCAATGAACTCAGGCAGCGGATCTTCTCCGAGTACCGGGAGACCGTGCAACGCAGGTATTTCACGGTAACCGGCGAGAATCCCGACGAGAAGACCATCGACCTCCTGATTTCTACAGGTGAGAGTGAGACGTTCCTTCGGAAAGCCATCCAAGAGCAAGGTAGGGGAAGAATACTGGACACAATCAATGAAATTCAAGAGAGGCACGATGCGGTGAAAGATTTGGAGAAGAATCTGCAGGAATTGCATCAAGTGTTCCTGGACATGGCAGTTCTGGTGCAATCCCAGGGTGAGCAATTGGATGATATTGAGAGCCACGTGGCGAGAGCGAGCTCGTTTGTGAAGAGGGGAGCCCAGCAGCTACAAACAGCAAGGAAGCACCAGAAGAACACCAGCAAATGGACCTGTTATGCCATTACGCTTCTGCTTGTGATTATCTTGTTCGTCGTGCTCTTCACTGTGAGGCCATGGGAAAATAATGGAGGAAGTTCGTCGTCATCACCGCAAACACCTGCACCACCAACGCCACCACCTCCTCCTCCTTCGGCTTAA 999 0.5325 MNDLFSSSFSRFRSEASSQDHHQHHVIEMGSVAASTSAGNLDKFFEDVESIKDELKELERLNQNLQSSHEQSKTLHNAQAVKDLRSRMDSDVALALKKAKLIKVKLEALKRSNAACRTLPDCGPGSSSDRTRTSVVNGLRKNMKDSMESFNELRQRIFSEYRETVQRRYFTVTGENPDEKTIDLLISTGESETFLRKAIQEQGRGRILDTINEIQERHDAVKDLEKNLQELHQVFLDMAVLVQSQGEQLDDIESHVARASSFVKRGAQQLQTARKHQKNTSKWTCYAITLLLVIILFVVLFTVRPWENNGGSSSSSPQTPAPPTPPPPPPSA 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1039 332 CDD SNARE_syntaxin1-like 210 272 - -
Lele07g1039 332 MobiDBLite consensus disorder prediction 318 332 - -
Lele07g1039 332 SMART SynN_4 36 162 IPR006011 GO:0016020
Lele07g1039 332 Coils Coil 211 234 - -
Lele07g1039 332 CDD SynN 41 198 IPR006011 GO:0016020
Lele07g1039 332 ProSitePatterns Syntaxin / epimorphin family signature. 217 256 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lele07g1039 332 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 38 168 - -
Lele07g1039 332 PANTHER SYNTAXIN 49 296 IPR045242 -
Lele07g1039 332 Gene3D - 208 304 - -
Lele07g1039 332 MobiDBLite consensus disorder prediction 308 332 - -
Lele07g1039 332 SUPERFAMILY t-snare proteins 40 266 IPR010989 GO:0016020|GO:0016192
Lele07g1039 332 Pfam Syntaxin 43 246 IPR006011 GO:0016020
Lele07g1039 332 Pfam SNARE domain 247 299 IPR000727 -
Lele07g1039 332 Coils Coil 136 156 - -
Lele07g1039 332 Coils Coil 41 78 - -
Lele07g1039 332 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 211 273 IPR000727 -
Lele07g1039 332 SMART tSNARE_6 206 273 IPR000727 -
Lele07g1039 332 FunFam Syntaxin 132 204 304 - -
Lele07g1039 332 Gene3D - 38 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1039 Lele-ChrLele07 6252262 6253566 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1039 29 326 SNARE and Associated Proteins AT3G11820 71.429 1.66e-153 431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1001 05 6187472 6188754 Lele07g1039 07 6252262 6253566 hybridization
Lele06g0860 06 5347474 5348793 Lele07g1039 07 6252262 6253566 hybridization