Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1037 ATGACTGATGAAGGTGAAAGCGAAACATTCTTGAAGAAGGCAATACAAGAGCAGGGGAGGGCGAGCATTGTGGAGACGATAAAGGAGATACAAGAGAGGAATGACGCAGTGAGGGAGATAGAGAGGGATCTGAATGAGCTGCATCAAGTGTTCATGGACATGGCGGTGTTGGTGCAGTCGCAGGGGGAACAATTGGACGACATAGAGAGCCACATGGCTCGAGCTAATTCGTTCGTAAGGAGCGGGGTGCACCAGCTCCATGTTGCTAAGAAGAACCAGAAAAATACCCGCAAATGGACCTCGTTTGCTGATGTTGGGACTCATATCAATATCACCTTAAAAACTTGTAAACTCGTAGGGGAACAAAATACGACAGCTGGTCTTATAAAGAAAGCAACGAAGCCAAATGTGCATTTTGGCAGTCCATTGTGTGGAATTCGTTTTCTCAGAGGAGGCATGGCAACTATTCGAATGATAGATATAGCTGTCAACTTCACAGATGGAATGTTCAAAGGAATCTACAACGGCAAGCAATGTCACGTCTCAGATATTGCAACCGTCTTGAGCAGAGCTTGGAGTGCTGGGGTCGACCGAATTATTGTAACTGGTGGATCCCTTGAGGAATCAAGGGAAGCTCTTGCAATTGAAGAAACAGATGGACGGCTTTTCTGCACGGTTGGTGTGCATCCAACACGTTGTAAGGAATTTGAGGAGGGCGGAGATCCAGGAAAGCATTTTCAGGATCTTTTGTCATTGGCTAAAGAAGGAATTCAAAAAGGAAAGGTGGTTGCAGTTGGAGAATGTGGATTAGATTATGATAGGCTTCACTTTTGCCCTGCTGAGATTCAAAAGAAGTATTTCGAGAAGCAATTTGAATTAGCACATATCACAAAACTGCCAATGTTTTTGCACATGCGAGCAGCTGCTGCAGATTTTTGTGAATTATTTGAGAGAAATAGAGACAGGTTCACTGCTGGAGTGACTCATTCATTTACTGGTAGTGCAGAAGATTGTATTAAGCTTCTCTCATTTGATAATATGTACATAGGCATAAATGGCTGCTCGTTGAAGACAACTGAGAACCTTGATGTAGTGACAGGTATTCCTGTTGAGAGAATGGTGATTGAAACAGACTCACCATACTGTGAAGTCAAGAACACTCATGCAGGAATTGGATTTGTTAAATCTACATGTCCCTCTAAAAAGAAAGAGAAGTATGATCAAGGGTGCATTGTCAAAGGCCGGAATGAACCTTGTTTAGTTAGGCAAGTTCTTGAGGTGGTTGCCGGTTGTAAAGGCATCAACGACTTGGGTATCGTTCCTTCTGTCAAAGTGCTACATTACGAAGCGATTACCCAGAAAGCAGTCTCATGGACAACAGATGATTATTTACTGTTTAGGATCACTGATGGTTTGCAATGCTTTTCATGGGGCAAAGCACATCTATCTGTTTTCCCCCTTTATTCCCTCACTTTTTCGCTTTGCTTCTTTTGCTTTGGTCAAACTCGTACTGTTTCTGTGTATGAACCAAACAAGTCCGAAGAAGATTTCCAATTCAATGATAATTTTGCCGTTTTACGTCACGCATATCACTATTTCCGTCCTTTCCGATGA 1614 0.4287 MTDEGESETFLKKAIQEQGRASIVETIKEIQERNDAVREIERDLNELHQVFMDMAVLVQSQGEQLDDIESHMARANSFVRSGVHQLHVAKKNQKNTRKWTSFADVGTHINITLKTCKLVGEQNTTAGLIKKATKPNVHFGSPLCGIRFLRGGMATIRMIDIAVNFTDGMFKGIYNGKQCHVSDIATVLSRAWSAGVDRIIVTGGSLEESREALAIEETDGRLFCTVGVHPTRCKEFEEGGDPGKHFQDLLSLAKEGIQKGKVVAVGECGLDYDRLHFCPAEIQKKYFEKQFELAHITKLPMFLHMRAAAADFCELFERNRDRFTAGVTHSFTGSAEDCIKLLSFDNMYIGINGCSLKTTENLDVVTGIPVERMVIETDSPYCEVKNTHAGIGFVKSTCPSKKKEKYDQGCIVKGRNEPCLVRQVLEVVAGCKGINDLGIVPSVKVLHYEAITQKAVSWTTDDYLLFRITDGLQCFSWGKAHLSVFPLYSLTFSLCFFCFGQTRTVSVYEPNKSEEDFQFNDNFAVLRHAYHYFRPFR 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1037 537 Coils Coil 27 50 - -
Lele07g1037 537 Pfam Syntaxin 1 62 IPR006011 GO:0016020
Lele07g1037 537 SUPERFAMILY t-snare proteins 3 82 IPR010989 GO:0016020|GO:0016192
Lele07g1037 537 FunFam Putative tatD related deoxyribonuclease 153 453 - -
Lele07g1037 537 Gene3D - 151 446 - -
Lele07g1037 537 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 27 89 IPR000727 -
Lele07g1037 537 SUPERFAMILY Metallo-dependent hydrolases 158 435 IPR032466 -
Lele07g1037 537 Pfam TatD related DNase 179 434 IPR001130 GO:0016788
Lele07g1037 537 CDD TatD_DNAse 158 435 IPR001130 GO:0016788
Lele07g1037 537 Pfam SNARE domain 63 100 IPR000727 -
Lele07g1037 537 PANTHER TATD FAMILY DEOXYRIBONUCLEASE 157 437 - -
Lele07g1037 537 SMART tSNARE_6 22 89 IPR000727 -
Lele07g1037 537 FunFam Syntaxin 132 20 116 - -
Lele07g1037 537 Gene3D - 20 112 - -
Lele07g1037 537 ProSitePatterns Syntaxin / epimorphin family signature. 33 72 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lele07g1037 537 CDD SNARE_syntaxin1-like 26 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1037 Lele-ChrLele07 6244468 6249827 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1037 5 103 SNARE and Associated Proteins AT1G61290 66.667 1.51e-38 141
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0999 05 6180611 6184602 Lele07g1037 07 6244468 6249827 hybridization
Lele06g0859 06 5340455 5345765 Lele07g1037 07 6244468 6249827 hybridization