LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele07g1036	ATGGCTGCCACAGCCTCTCCTTCCTCTTCTCTCTGCAATCGACTCCACAGCCTCTACGTCACTCCCTCTTCCTCCTCAATCACCCTCAAATTCCCTCTCAGACCCATTTCTCATAAACCTCCCAACCTCGACCTCAAATCTCACTTCCTCAATTCTTCTCCTCTCTCACTCTACCATCGTTTGGCTTCTGCTGCCTTTAATGGATTCGAAGTCGCTCAAGACAGCACAAGCGCTGAGCAGGTAGAACAGGTTGCACCAGAAGCCGAACCCTCTGAAAAATCAGAACAAGAGGAGGATGACCAAAAGGTATCTGACTCAAATGAAGCTGGGAGGCTTTATGTGGGAAATTTGCCCTTTCCCATGACTTCTTCCCAGCTATCCGAGATTTTTCAAGAGGCTGGCAATGTGGTGTCTGTAGAGATAGTATATGATCGCATCCCGGATAGAAGCAGAGGATTTGCATTTGTCACAATGGGAAGCGCTGAGGATGCTAAAGAAGCCATTCGGATGTTTGATGGCTCACAAGTTGGAGGTAGGACGGTGAAGGTAAACTTGCCAGAAGTGCCAAGAGGAGGTGAAAGGCTAGTGATGGGGCCAAAAGTAAGGAACAACTACAGAGGCTTCGTGGACAGCCCTCACAAGGTATATGCAGGAAACCTTGGATGGGGATTGACTTCACAGGGTCTGAGAGATGCTTTTGCTGGTCAGCCTGGCTTTTTGAGTGCCAAGGTCATCTATGAAAGGGACACCGGAAGATCTCGAGGCTTTGGCTTTGTCTCCTTCGAAACTGCTGAGGATGTTGAGGCTGCTTTGAATGCTATGACTGGTGTGGAGGTTCAAGGCAGGCCTCTGAAACTGAATTTGGCGGCAGATAGGACAAGTTCATCTCCTTCAACAATGGATGAAACTGCAGAAGCTAATGTTGATGCCTTGGAATTGGTGTCTAGAGTGAGCACATGA	960	0.4854	MAATASPSSSLCNRLHSLYVTPSSSSITLKFPLRPISHKPPNLDLKSHFLNSSPLSLYHRLASAAFNGFEVAQDSTSAEQVEQVAPEAEPSEKSEQEEDDQKVSDSNEAGRLYVGNLPFPMTSSQLSEIFQEAGNVVSVEIVYDRIPDRSRGFAFVTMGSAEDAKEAIRMFDGSQVGGRTVKVNLPEVPRGGERLVMGPKVRNNYRGFVDSPHKVYAGNLGWGLTSQGLRDAFAGQPGFLSAKVIYERDTGRSRGFGFVSFETAEDVEAALNAMTGVEVQGRPLKLNLAADRTSSSPSTMDETAEANVDALELVSRVST	319

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele07g1036	319	MobiDBLite	consensus disorder prediction	77	106	-	-
	Lele07g1036	319	Gene3D	-	67	192	IPR012677	-
	Lele07g1036	319	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	110	188	IPR000504	GO:0003723
	Lele07g1036	319	MobiDBLite	consensus disorder prediction	86	106	-	-
	Lele07g1036	319	SMART	rrm1_1	111	184	IPR000504	GO:0003723
	Lele07g1036	319	SMART	rrm1_1	214	287	IPR000504	GO:0003723
	Lele07g1036	319	SUPERFAMILY	RNA-binding domain, RBD	107	186	IPR035979	GO:0003676
	Lele07g1036	319	CDD	RRM_HP0827_like	111	187	-	-
	Lele07g1036	319	PANTHER	OS02G0815200 PROTEIN	47	292	-	-
	Lele07g1036	319	Gene3D	-	198	303	IPR012677	-
	Lele07g1036	319	FunFam	33 kDa ribonucleoprotein, chloroplastic	195	299	-	-
	Lele07g1036	319	SUPERFAMILY	RNA-binding domain, RBD	210	295	IPR035979	GO:0003676
	Lele07g1036	319	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	213	291	IPR000504	GO:0003723
	Lele07g1036	319	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	112	182	IPR000504	GO:0003723
	Lele07g1036	319	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	215	285	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele07g1036	Lele-ChrLele07	6241805	6243300	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele07g1036	112	289	Eukaryotic Initiation Factors Gene Family	AT3G16380	31.868	3.09e-19	86.3

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele07g1036	07	6241805	6243300	Lele13g1601	13	25001079	25006786	CCT
	Lele07g1036	07	6241805	6243300	Lele14g1534	14	23400950	23404091	CCT
	Lele07g1036	07	6241805	6243300	Lele15g0815	15	4713068	4718904	CCT
	Lele07g1036	07	6241805	6243300	Lele16g0835	16	4669477	4672659	CCT
	Lele05g0998	05	6173898	6179666	Lele07g1036	07	6241805	6243300	hybridization
	Lele06g0858	06	5338083	5339472	Lele07g1036	07	6241805	6243300	hybridization