Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1005 ATGGAATTGGGTCTCTGTTGTCTCTTCGAAACAGGCTTAGAACAGCTTGTGGAGTCGAATAGGCCAACCGAATGCGAGTTTCTGGAAAATCCTAAGAACAAATTGGAGAGTTGCGCCGCTCGCACTTTTCTGCGTCTCGCATTATTCGCCTTTAGTTGGATCAGGATGGAGGCTCAGGCGAAGCATGTCGTGGTTGTTAAAGTCATTGGTCGTACTGGTTCCAGAGGGCAGGTGACTCAGGTTAGAGTCAAGTTTTTGGATGATCACAACCGGTATATCATGAGGAATGTGAAAGGACCAGTGAGGGAAGGAGACATTCTCACCCTACTTGAGTCTGAAAGAGAAGCAAGGAGATTGCGCTAG 363 0.4766 MELGLCCLFETGLEQLVESNRPTECEFLENPKNKLESCAARTFLRLALFAFSWIRMEAQAKHVVVVKVIGRTGSRGQVTQVRVKFLDDHNRYIMRNVKGPVREGDILTLLESEREARRLR 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1005 120 ProSitePatterns Ribosomal protein S28e signature. 111 119 IPR028626 -
Lele07g1005 120 Gene3D - 55 120 IPR012340 -
Lele07g1005 120 SUPERFAMILY Nucleic acid-binding proteins 56 120 IPR012340 -
Lele07g1005 120 Hamap 30S ribosomal protein S28e [rps28e]. 56 120 IPR000289 GO:0003735|GO:0005840|GO:0006412
Lele07g1005 120 PANTHER 40S RIBOSOMAL PROTEIN S28 56 120 IPR000289 GO:0003735|GO:0005840|GO:0006412
Lele07g1005 120 CDD S1_S28E 61 120 IPR000289 GO:0003735|GO:0005840|GO:0006412
Lele07g1005 120 FunFam 40S ribosomal protein S28 55 120 - -
Lele07g1005 120 Pfam Ribosomal protein S28e 59 119 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1005 Lele-ChrLele07 6050794 6052698 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1005 56 120 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 86.154 3.48e-34 111